Miyakogusa Predicted Gene

Lj0g3v0109419.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0109419.1 tr|B9N1H2|B9N1H2_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_743006
PE=4,30.77,1e-17,seg,NULL,CUFF.6285.1
         (855 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60564 similar to UniRef100_Q3T2N3 Cluster: Truncated ...   196   2e-49

>gnl|LJGI|TC60564 similar to UniRef100_Q3T2N3 Cluster: Truncated methicillin
           resistance protein MecR1; n=2; Staphylococcus|Rep:
           Truncated methicillin resistance protein MecR1 -
           Staphylococcus aureus, partial (44%)
          Length = 820

 Score =  196 bits (99), Expect = 2e-49
 Identities = 129/139 (92%)
 Strand = Plus / Plus

                                                                       
Query: 400 aaaatggacaatgttggtcgctattctggaacagagttgtctcctcaattattttctcaa 459
           |||| |||||||||||||| || |||||||||||||||  ||||||||||||||||||||
Sbjct: 618 aaaacggacaatgttggtcactcttctggaacagagtttgctcctcaattattttctcaa 677

                                                                       
Query: 460 gctgcccctaataagaagaaatcagctacatcacagcgaagtggacgtgacttgaatctt 519
           |||||||| | |||||||||||||||||||||||||| |||||||  |||||||||||||
Sbjct: 678 gctgccccgagtaagaagaaatcagctacatcacagcaaagtggagatgacttgaatctt 737

                              
Query: 520 tcattaggaaaagagtcat 538
           |||||||||||||||||||
Sbjct: 738 tcattaggaaaagagtcat 756



 Score =  145 bits (73), Expect = 5e-34
 Identities = 133/153 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  cagaaacaggccattgtgcatgatgtgattgacgttgacaacgatgaagactctgatgat 135
           ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||  | |||
Sbjct: 123 cagaaccaggccattgtgcatgatgtgattgacattgacaacgatgaaaactccaacgat 182

                                                                       
Query: 136 gtagtgattattggtgaaaaagaaagtaaaagtgacaaggggaaggcaattgcatccggt 195
           ||||||||  |||| ||||||||||||||| || ||||||||||||||||||||   | |
Sbjct: 183 gtagtgatcgttggggaaaaagaaagtaaacgtaacaaggggaaggcaattgcagaagct 242

                                            
Query: 196 tatgatggttatgtggatcatcaaattgtggaa 228
           ||| |||||||||  ||||||||| | ||||||
Sbjct: 243 tataatggttatggagatcatcaagtagtggaa 275