Miyakogusa Predicted Gene

Lj0g3v0106869.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0106869.1 Non Chatacterized Hit- tr|B9RVY3|B9RVY3_RICCO
Cleavage and polyadenylation specificity factor,
putat,83.02,0,CPSF100_C,Cleavage and polyadenylation specificity
factor 2, C-terminal; RMMBL,RNA-metabolising meta,CUFF.6097.1
         (1137 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS348088 similar to UniRef100_Q9LKF9 Cluster: Cleavage ...   706   0.0  

>gnl|LJGI|FS348088 similar to UniRef100_Q9LKF9 Cluster: Cleavage and polyadenylation
            specificity factor subunit 2; n=2; Arabidopsis
            thaliana|Rep: Cleavage and polyadenylation specificity
            factor subunit 2 - Arabidopsis thaliana (Mouse-ear
            cress), partial (16%)
          Length = 686

 Score =  706 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Minus

                                                                        
Query: 782  tcaagaagctgggagattatgaagtagcttgggttgatgctgaagtagggaaagcagaaa 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  tcaagaagctgggagattatgaagtagcttgggttgatgctgaagtagggaaagcagaaa 627

                                                                        
Query: 842  atgacacgctctcgctgctgcctgtttccggagcaactcctccgcataaatctgttcttg 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  atgacacgctctcgctgctgcctgtttccggagcaactcctccgcataaatctgttcttg 567

                                                                        
Query: 902  ttggtgatttgaaattggcagatttcaagcagttcctctccagcaagggtgttcaggtgg 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  ttggtgatttgaaattggcagatttcaagcagttcctctccagcaagggtgttcaggtgg 507

                                                                        
Query: 962  aatttgctggtggggctttgcgttgcggtgaatatgtaactgtccggaaggttggggatg 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  aatttgctggtggggctttgcgttgcggtgaatatgtaactgtccggaaggttggggatg 447

                                                                        
Query: 1022 caagtcagaagggtgctggttctggtacacagcaaattattattgaaggccccctgtgtg 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  caagtcagaagggtgctggttctggtacacagcaaattattattgaaggccccctgtgtg 387

                                                                    
Query: 1082 aagattactataaaattcgcgaatatctctattcacagttttatttgctttagatt 1137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  aagattactataaaattcgcgaatatctctattcacagttttatttgctttagatt 331