Miyakogusa Predicted Gene

Lj0g3v0105289.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0105289.1 Non Chatacterized Hit- tr|I1KC34|I1KC34_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.67,0,SNURPORTIN1
(RNUT1 PROTEIN) (RNA, U TRANSPORTER 1),NULL; DNA ligase/mRNA capping
enzyme, catalytic d,CUFF.5997.1
         (1257 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV424640 similar to UniRef100_A7PHH1 Cluster: Chromosom...   672   0.0  
gnl|LJGI|TC76653                                                       78   1e-13

>gnl|LJGI|AV424640 similar to UniRef100_A7PHH1 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (27%)
          Length = 342

 Score =  672 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 626 actccaaggttgccgagagtggtgcttgtgaccctccttcgcattatcacaagtataggt 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   actccaaggttgccgagagtggtgcttgtgaccctccttcgcattatcacaagtataggt 63

                                                                       
Query: 686 tcagtttggttcccgtctatagttgtgacagggatggtctttatgcggcttataccgcgc 745
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  tcagtttggttcccgtctatagttgtgacagggatggtctttatgcggcttataccgcgc 123

                                                                       
Query: 746 ctgtgccttatgtcaaagacggtcttctcttttataacaagcatgcacactaccaagcag 805
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctgtgccttatgtcaaagacggtcttctcttttataacaagcatgcacactaccaagcag 183

                                                                       
Query: 806 gaataacgcctttagtattagtttggaaggatgagaactgcagtcaatatgttatggaca 865
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaataacgcctttagtattagtttggaaggatgagaactgcagtcaatatgttatggaca 243

                                                                       
Query: 866 cggacagtaaaggacaggttccgaaccagcagcaggtggttttggagcttcaagaagatg 925
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cggacagtaaaggacaggttccgaaccagcagcaggtggttttggagcttcaagaagatg 303

                                                  
Query: 926 gaaaactgaccacctctgatgatcctccagtggtattcg 964
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaaactgaccacctctgatgatcctccagtggtattcg 342


>gnl|LJGI|TC76653 
          Length = 575

 Score = 77.8 bits (39), Expect = 1e-13
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                   
Query: 1219 gaaagcaaaccttgcgatattgagatggatggttgataa 1257
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2    gaaagcaaaccttgcgatattgagatggatggttgataa 40