Miyakogusa Predicted Gene
- Lj0g3v0103959.5
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0103959.5 Non Chatacterized Hit- tr|B7FID7|B7FID7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.56,0,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.5917.5
(651 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65696 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-bi... 1291 0.0
gnl|LJGI|FS334315 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-b... 141 6e-33
gnl|LJGI|TC65571 similar to UniRef100_A9U298 Cluster: Predicted ... 141 6e-33
gnl|LJGI|TC57394 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-bi... 141 6e-33
gnl|LJGI|TC58753 similar to UniRef100_A7PBI0 Cluster: Chromosome... 123 1e-27
>gnl|LJGI|TC65696 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(83%)
Length = 1050
Score = 1291 bits (651), Expect = 0.0
Identities = 651/651 (100%)
Strand = Plus / Plus
Query: 1 atggacgaggaagagcacgaggtgtacggaggagaaatccccgacgtcggagaaatggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 atggacgaggaagagcacgaggtgtacggaggagaaatccccgacgtcggagaaatggaa 207
Query: 61 gcagacgtcgacatgtccgccgccgacgatgacgccgccgccgtcaaggagctcgacgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gcagacgtcgacatgtccgccgccgacgatgacgccgccgccgtcaaggagctcgacgaa 267
Query: 121 atgaagcgccgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgaagcgccgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagct 327
Query: 181 aaagtcgagaaggagattggcaccgttcaagatccggctgctgcagctgcttcacaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaagtcgagaaggagattggcaccgttcaagatccggctgctgcagctgcttcacaagca 387
Query: 241 aacaaggaggagacagatggtcggtccgtttttgttggcaatgttgattatgcatgcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aacaaggaggagacagatggtcggtccgtttttgttggcaatgttgattatgcatgcaca 447
Query: 301 cctgaagaagtgcagcaacactttcaatcatgtggtacagttaacagggtcactatcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cctgaagaagtgcagcaacactttcaatcatgtggtacagttaacagggtcactatcctg 507
Query: 361 acagacaagtttggccagcctaaaggttttgcttatgtggaatttgtggaagctgaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acagacaagtttggccagcctaaaggttttgcttatgtggaatttgtggaagctgaagct 567
Query: 421 gttcaagaggctctccggttgaatgaatctgaactgcatggccgtcaactgaaggttctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gttcaagaggctctccggttgaatgaatctgaactgcatggccgtcaactgaaggttctg 627
Query: 481 cctaagaggaccaatgttcctggaatgaagcaatatcgtcctaggcgctatgatccttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctaagaggaccaatgttcctggaatgaagcaatatcgtcctaggcgctatgatccttac 687
Query: 541 atggcatatggtttcaggaggccatatgctccttctccatacttctactccccttatggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atggcatatggtttcaggaggccatatgctccttctccatacttctactccccttatggg 747
Query: 601 aaggttcctaggtttagaaggccagcgcgttacatgccttactactagaag 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaggttcctaggtttagaaggccagcgcgttacatgccttactactagaag 798
>gnl|LJGI|FS334315 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(67%)
Length = 809
Score = 141 bits (71), Expect = 6e-33
Identities = 206/251 (82%)
Strand = Plus / Plus
Query: 271 tttgttggcaatgttgattatgcatgcacacctgaagaagtgcagcaacactttcaatca 330
|||||||||||||| |||||| ||||||| ||||||||||||||||| || || ||||||
Sbjct: 321 tttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaatca 380
Query: 331 tgtggtacagttaacagggtcactatcctgacagacaagtttggccagcctaaaggtttt 390
||||| || || ||| | ||||| || | || || ||||||||||||||||| |||| |
Sbjct: 381 tgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggttat 440
Query: 391 gcttatgtggaatttgtggaagctgaagctgttcaagaggctctccggttgaatgaatct 450
|| ||||| |||||| | |||| || ||||| |||||||||||| | ||||||| |||
Sbjct: 441 gcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagtct 500
Query: 451 gaactgcatggccgtcaactgaaggttctgcctaagaggaccaatgttcctggaatgaag 510
||||| ||||| |||||| ||||||| |||||||||||| || || || ||||||
Sbjct: 501 gaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatgaag 560
Query: 511 caatatcgtcc 521
|||| ||||||
Sbjct: 561 caatttcgtcc 571
Score = 56.0 bits (28), Expect = 3e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 130 cgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagctaaagtcgag 189
|||||||||||||||||||| ||||| || ||| | || |||||||| || || || |||
Sbjct: 150 cgcttgaaggaaatggaagatgaagctgcagctttgcgggagatgcaggccaaggttgag 209
Query: 190 aaggagat 197
||||||||
Sbjct: 210 aaggagat 217
>gnl|LJGI|TC65571 similar to UniRef100_A9U298 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(71%)
Length = 754
Score = 141 bits (71), Expect = 6e-33
Identities = 206/251 (82%)
Strand = Plus / Plus
Query: 271 tttgttggcaatgttgattatgcatgcacacctgaagaagtgcagcaacactttcaatca 330
|||||||||||||| |||||| ||||||| ||||||||||||||||| || || ||||||
Sbjct: 317 tttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaatca 376
Query: 331 tgtggtacagttaacagggtcactatcctgacagacaagtttggccagcctaaaggtttt 390
||||| || || ||| | ||||| || | || || ||||||||||||||||| |||| |
Sbjct: 377 tgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggttat 436
Query: 391 gcttatgtggaatttgtggaagctgaagctgttcaagaggctctccggttgaatgaatct 450
|| ||||| |||||| | |||| || ||||| |||||||||||| | ||||||| |||
Sbjct: 437 gcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagtct 496
Query: 451 gaactgcatggccgtcaactgaaggttctgcctaagaggaccaatgttcctggaatgaag 510
||||| ||||| |||||| ||||||| |||||||||||| || || || ||||||
Sbjct: 497 gaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatgaag 556
Query: 511 caatatcgtcc 521
|||| ||||||
Sbjct: 557 caatttcgtcc 567
Score = 56.0 bits (28), Expect = 3e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 130 cgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagctaaagtcgag 189
|||||||||||||||||||| ||||| || ||| | || |||||||| || || || |||
Sbjct: 176 cgcttgaaggaaatggaagatgaagctgcagctttgcgggagatgcaggccaaggttgag 235
Query: 190 aaggagat 197
||||||||
Sbjct: 236 aaggagat 243
>gnl|LJGI|TC57394 similar to UniRef100_A1YMZ8 Cluster: Poly(A)-binding protein
II-like; n=1; Brassica rapa|Rep: Poly(A)-binding protein
II-like - Brassica campestris (Field mustard), partial
(75%)
Length = 1085
Score = 141 bits (71), Expect = 6e-33
Identities = 206/251 (82%)
Strand = Plus / Plus
Query: 271 tttgttggcaatgttgattatgcatgcacacctgaagaagtgcagcaacactttcaatca 330
|||||||||||||| |||||| ||||||| ||||||||||||||||| || || ||||||
Sbjct: 263 tttgttggcaatgtggattattcatgcactcctgaagaagtgcagcagcatttccaatca 322
Query: 331 tgtggtacagttaacagggtcactatcctgacagacaagtttggccagcctaaaggtttt 390
||||| || || ||| | ||||| || | || || ||||||||||||||||| |||| |
Sbjct: 323 tgtggaactgtaaaccgagtcaccattcgcactgataagtttggccagcctaagggttat 382
Query: 391 gcttatgtggaatttgtggaagctgaagctgttcaagaggctctccggttgaatgaatct 450
|| ||||| |||||| | |||| || ||||| |||||||||||| | ||||||| |||
Sbjct: 383 gcctatgtagaatttcttgaagtagaggctgtccaagaggctctcgcgctgaatgagtct 442
Query: 451 gaactgcatggccgtcaactgaaggttctgcctaagaggaccaatgttcctggaatgaag 510
||||| ||||| |||||| ||||||| |||||||||||| || || || ||||||
Sbjct: 443 gaactacatgggcgtcaattgaaggtaagtggtaagaggaccaacgtaccagggatgaag 502
Query: 511 caatatcgtcc 521
|||| ||||||
Sbjct: 503 caatttcgtcc 513
Score = 56.0 bits (28), Expect = 3e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 130 cgcttgaaggaaatggaagaagaagccgccgctcttcgtgagatgcaagctaaagtcgag 189
|||||||||||||||||||| ||||| || ||| | || |||||||| || || || |||
Sbjct: 122 cgcttgaaggaaatggaagatgaagctgcagctttgcgggagatgcaggccaaggttgag 181
Query: 190 aaggagat 197
||||||||
Sbjct: 182 aaggagat 189
>gnl|LJGI|TC58753 similar to UniRef100_A7PBI0 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (79%)
Length = 1070
Score = 123 bits (62), Expect = 1e-27
Identities = 196/238 (82%), Gaps = 2/238 (0%)
Strand = Plus / Plus
Query: 273 tgttggcaatgttgattatgcatgcacacctgaagaagtgcagcaacactttcaatcatg 332
||||||||||||||| |||||||| ||||| |||||||| || || || ||||| |||||
Sbjct: 339 tgttggcaatgttgactatgcatgtacaccagaagaagtccaacagcattttcagtcatg 398
Query: 333 tggtacagttaacagggtcactatcctgacagacaagtttggccagcctaaaggttttgc 392
||| || || ||||| || || || |||||||||| ||||| || || ||||| |||||
Sbjct: 399 tggaactgtgaacagagtgacaatattgacagacaaatttggtcaaccaaaaggatttgc 458
Query: 393 ttatgtggaatttgtggaagctgaagctgttcaagaggctctccggttgaatgaatctga 452
|||||| || ||||| || ||||| |||||||| | ||| || ||| |||||||| ||
Sbjct: 459 ttatgtagagtttgttgaggctgaggctgttcagaatgctgtcatgttaaatgaatcaga 518
Query: 453 actgcatggccgtcaactgaaggt-tctgcctaagaggaccaatgttcctggaatgaa 509
| ||||||| || ||||||||||| |||| ||||| | || |||||||||||||||||
Sbjct: 519 attgcatggtcggcaactgaaggtgtctg-ctaagcgtacaaatgttcctggaatgaa 575