Miyakogusa Predicted Gene

Lj0g3v0103089.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0103089.1 tr|F2E5W3|F2E5W3_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.48,4e-19,ZF_RANBP2_1,Zinc finger, RanBP2-type; Ran BP2/NZF
zinc finger-like,NULL; ZF_RANBP2_2,Zinc finger, Ra,CUFF.5827.1
         (687 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74577 weakly similar to UniRef100_A7Q959 Cluster: Chr...   182   2e-45

>gnl|LJGI|TC74577 weakly similar to UniRef100_A7Q959 Cluster: Chromosome chr19
           scaffold_66, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_66, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (24%)
          Length = 793

 Score =  182 bits (92), Expect = 2e-45
 Identities = 182/212 (85%)
 Strand = Plus / Plus

                                                                       
Query: 266 atgaagatgttagctatgaatctgctgagaatattgtacataagcggaaaattgttggaa 325
           ||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 59  atgaaaatgttaacaatgaatctgctgagaacattgtacagaagcggaaaattgttggaa 118

                                                                       
Query: 326 gcacaaaactaacaaacaattctactctaccttgggatcaagtatctcaaaaaagaagtc 385
           || ||| | ||||| ||||||||||||||||||  ||||||||||||  |||||||||| 
Sbjct: 119 gctcaagattaacagacaattctactctaccttcagatcaagtatctagaaaaagaagtt 178

                                                                       
Query: 386 gttctaaggatttaattttacccattcactcatctagtgcctcaatgtttatagatttaa 445
           |||||||||| | || ||||||| |||| |||||| ||||| | || ||| || ||||||
Sbjct: 179 gttctaaggactcaagtttacccgttcattcatctggtgccccgatatttgtaaatttaa 238

                                           
Query: 446 ctgaggatgaacaagaagttggatctatcact 477
           ||| ||||| |||| || | ||||||||||||
Sbjct: 239 ctgcggatgcacaaaaaatcggatctatcact 270



 Score =  139 bits (70), Expect = 3e-32
 Identities = 103/114 (90%)
 Strand = Plus / Plus

                                                                       
Query: 546 tcattccgaagaacctgcaatgtgggagtgtccgatgtgcactctgttgaatatgacaag 605
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||  
Sbjct: 408 tcattccgaagaatctgcaatgtgggagtgtccgatgtgcactctgttgaatcaaacatt 467

                                                                 
Query: 606 tgcttctatatgtgagttctgtgacacacaacagccaaaagatgttaccaccaa 659
           |||| ||||||||||||| |||| ||| ||||| ||||||||||||||||||||
Sbjct: 468 tgctcctatatgtgagttgtgtggcacgcaacaaccaaaagatgttaccaccaa 521