Miyakogusa Predicted Gene
- Lj0g3v0102449.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0102449.1 tr|G7IRD7|G7IRD7_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_2g086070 PE=4
SV=1,67.57,0.0000008,NAD(P)-binding Rossmann-fold domains,NULL; no
description,NAD(P)-binding domain; Sterile,Fatty acyl-,CUFF.5778.1
(741 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63658 similar to UniRef100_A7R0D9 Cluster: Chromosome... 1249 0.0
gnl|LJGI|TC80071 similar to UniRef100_A7R0D9 Cluster: Chromosome... 341 4e-93
gnl|LJGI|TC68588 weakly similar to UniRef100_A7R0D9 Cluster: Chr... 133 2e-30
gnl|LJGI|CB827884 weakly similar to UniRef100_A7R0D9 Cluster: Ch... 123 2e-27
gnl|LJGI|TC70603 weakly similar to UniRef100_A7R0D9 Cluster: Chr... 92 6e-18
>gnl|LJGI|TC63658 similar to UniRef100_A7R0D9 Cluster: Chromosome chr6 scaffold_305,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_305, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 848
Score = 1249 bits (630), Expect = 0.0
Identities = 633/634 (99%)
Strand = Plus / Plus
Query: 108 aaccattgacagtttagctgttaattatggaaagggaaaactaacatgcttccttggaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aaccattgacagtttagctgttaattatggaaagggaaaactaacatgcttccttggaga 63
Query: 168 tctcaatggagttgtcgatgtgataccagctgatatggtggtgaatgcaatgctagtggc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tctcaatggagttgtcgatgtgataccagctgatatggtggtgaatgcaatgctagtggc 123
Query: 228 catggtagctcatgcaaatcaaccaagtgatcaggccacatatcatgtgggttcctctgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 catggtagctcatgcaaatcaaccaagtgatcaggccacatatcatgtgggttcctctgt 183
Query: 288 tagaaatccagttacataccataatctccaagactatggattaagatatttcacagcaaa 347
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 tagaaatccagttacataccataatttccaagactatggattaagatatttcacagcaaa 243
Query: 348 accatggatcaacaaggatggatcgagcgtaaaggttggcagagtaaatgtattaacaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 accatggatcaacaaggatggatcgagcgtaaaggttggcagagtaaatgtattaacaga 303
Query: 408 catggctagcttccggagatacatgttcattcgctacctgcttccattaaagggacttaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catggctagcttccggagatacatgttcattcgctacctgcttccattaaagggacttaa 363
Query: 468 gctggccaacacaacattttgccagtactttaaggggacatatctagagctcaacaggaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctggccaacacaacattttgccagtactttaaggggacatatctagagctcaacaggaa 423
Query: 528 gatccaggttgtgatgcgacttgtggaactttacaggccttacttgttcttcagtggcgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gatccaggttgtgatgcgacttgtggaactttacaggccttacttgttcttcagtggcgt 483
Query: 588 atttgatgatatgaacacagagaagttgcggattgcagcaagacaaggtgagacagagaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atttgatgatatgaacacagagaagttgcggattgcagcaagacaaggtgagacagagaa 543
Query: 648 agacttgttttacttcgaccccaaagatattgattgggatgattacttcatgaacactca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agacttgttttacttcgaccccaaagatattgattgggatgattacttcatgaacactca 603
Query: 708 tatccctggtatcgtcaagtacattttcaagtga 741
||||||||||||||||||||||||||||||||||
Sbjct: 604 tatccctggtatcgtcaagtacattttcaagtga 637
>gnl|LJGI|TC80071 similar to UniRef100_A7R0D9 Cluster: Chromosome chr6 scaffold_305,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_305, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 433
Score = 341 bits (172), Expect = 4e-93
Identities = 192/196 (97%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 547 cttgtggaactttacaggccttact-tgttcttcagtggcgtatttgatgatatgaacac 605
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtggaactttacag-ccttactgtgttcttcagtggcgtatttgatgatatgaacac 59
Query: 606 agagaagttgcggattgcagcaagacaaggtgagacagagaaagacttgttttacttcga 665
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 60 agagaagttgcggattgcagccagaccaggtgagacagagaaagacttgttttacttcga 119
Query: 666 ccccaaagatattgattgggatgattacttcatgaacactcatatccctggtatcgtcaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ccccaaagatattgattgggatgattacttcatgaacactcatatccctggtatcgtcaa 179
Query: 726 gtacattttcaagtga 741
||||||||||||||||
Sbjct: 180 gtacattttcaagtga 195
>gnl|LJGI|TC68588 weakly similar to UniRef100_A7R0D9 Cluster: Chromosome chr6
scaffold_305, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_305, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (45%)
Length = 795
Score = 133 bits (67), Expect = 2e-30
Identities = 493/631 (78%), Gaps = 8/631 (1%)
Strand = Plus / Plus
Query: 75 agaacctttccctggttggtctgagggtgtaagaaccattgacagtttagctgttaatta 134
|||||| |||||||| ||| ||| |||||||||||||| ||||||||| |||| |||
Sbjct: 23 agaaccattccctggctgggttgaaggtgtaagaaccatagacagtttaattgttgctta 82
Query: 135 tggaaagggaaaactaacatgcttccttggagatctcaatggagttgtcgatgtgatacc 194
||| || |||||| | ||||||||||||| || | || | ||| | |||||||||||
Sbjct: 83 tggtaaaggaaaattgacatgcttccttgcggacattaaggcggtttttgatgtgatacc 142
Query: 195 agctgatatggtggtgaatgcaatgctagtggccatggtagctcatgcaaatcaac---c 251
|||||| ||||||||||||||||| |||||||| ||||| | | ||||| |||| | |
Sbjct: 143 agctgacatggtggtgaatgcaatactagtggctatggtgggtaatgcagatcagcgccc 202
Query: 252 aagtgatcaggccacatatcatgtgggttcctctgttagaaatccagttacataccataa 311
||||| | | ||| ||||| |||||||||||| ||||||||| | ||||| |||
Sbjct: 203 ctgtgatatg---atataccatgttggttcctctgttgcaaatccagtgagataccttaa 259
Query: 312 tctccaagactatggattaagatatttcacagcaaaaccatggatcaacaaggatggatc 371
||| ||||||| || |||||||| | |||||||| || | ||||||| |||
Sbjct: 260 tcttgaagactacaacttcagatatttttctgcaaaaccgtgtaaggacaaggaaggaaa 319
Query: 372 gagcgtaaaggttggcagagtaaatgtatta-acagacatggctagcttccggagataca 430
| || |||||| ||||||| | |||| ||| ||||| ||||||| |||||||| |
Sbjct: 320 gcttgtcaaggttagcagagtcacaatattggaca-acatgcctagctttcggagatata 378
Query: 431 tgttcattcgctacctgcttccattaaagggacttaagctggccaacacaacattttgcc 490
||||||| |||||| |||||||| ||||||| || |||| | ||||||| | || ||||
Sbjct: 379 tgttcatccgctacttgcttccactaaaggggctagagctagtcaacacagctttctgcc 438
Query: 491 agtactttaaggggacatatctagagctcaacaggaagatccaggttgtgatgcgacttg 550
| || ||| |||| | ||||| || | ||||||||||||| |||||||||| | |
Sbjct: 439 aatattttcagggaatgtatcttgacattcacaggaagatccacattgtgatgcggttgg 498
Query: 551 tggaactttacaggccttacttgttcttcagtggcgtatttgatgatatgaacacagaga 610
| || ||||||| ||||||||||||||||| ||||||||||||| | ||||| ||||| |
Sbjct: 499 ttgacctttacaagccttacttgttcttcaatggcgtatttgataacatgaatacagaaa 558
Query: 611 agttgcggattgcagcaagacaaggtgagacagagaaagacttgttttacttcgacccca 670
|||||| || ||||||| |||||| || |||||| || |||| ||||| || || |
Sbjct: 559 agttgcaaatagcagcaaaacaaggggaagcagagatggatgtgttctactttgatccaa 618
Query: 671 aagatattgattgggatgattacttcatgaa 701
|| ||||||||||| || |||||||||||
Sbjct: 619 aaatgattgattgggaggactacttcatgaa 649
>gnl|LJGI|CB827884 weakly similar to UniRef100_A7R0D9 Cluster: Chromosome chr6
scaffold_305, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_305, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (36%)
Length = 541
Score = 123 bits (62), Expect = 2e-27
Identities = 139/164 (84%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 189 gataccagctgatatggtggtgaatgcaatgctagtggccatggtagctcatgcaaatca 248
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 106 gataccagctgacatggtggtgaatgcaatactagtagccatggtggctcatgcaaatca 165
Query: 249 accaagtgatcaggccacatatcatgtgggttcctctgttagaaatccagttacatacca 308
|| ||||| || |||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 166 tccttgtgat---atcatatatcatgtgggttcctctgtttcaaatccagtcacatacca 222
Query: 309 taatctccaagactatggattaagatatttcacagcaaaaccat 352
|||||| ||||||| || |||||||| || ||||||||||
Sbjct: 223 taatcttgaagactacaccttcagatattttactgcaaaaccat 266
Score = 71.9 bits (36), Expect = 5e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 564 gccttacttgttcttcagtggcgtatttgatgatatgaacacagagaagttgcggattgc 623
|||||||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||| ||
Sbjct: 478 gccttactgtttcttcaatggcgtatttgataatatgaacacagaaaagttgcagatagc 537
Query: 624 agca 627
||||
Sbjct: 538 agca 541
>gnl|LJGI|TC70603 weakly similar to UniRef100_A7R0D9 Cluster: Chromosome chr6
scaffold_305, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_305, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (38%)
Length = 856
Score = 91.7 bits (46), Expect = 6e-18
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 564 gccttacttgttcttcagtggcgtatttgatgatatgaacacagagaagttgcggattgc 623
|||||||| ||||||| ||||||||||||| ||||||||||||| ||||||| ||| ||
Sbjct: 416 gccttactgtttcttcaatggcgtatttgataatatgaacacagaaaagttgcagatagc 475
Query: 624 agcaagacaaggtgagacagagaaagacttgttttacttcgaccccaaagatattgattg 683
||||| |||||||| | ||| | || ||||||||||| ||||| ||| ||||||||
Sbjct: 476 agcaaaacaaggtggggtagaaatggatttgttttactttgacccaaaaatgattgattg 535
Query: 684 ggatgattacttcatgaa 701
||| || ||| |||||||
Sbjct: 536 ggaagactacatcatgaa 553
Score = 87.7 bits (44), Expect = 9e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 189 gataccagctgatatggtggtgaatgcaatgctagtggccatggtagctcatgcaaatca 248
|||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 135 gataccagctgacatggtggtgaatgcaatactagtagccatggtggctcatgcaaatca 194