Miyakogusa Predicted Gene
- Lj0g3v0102019.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0102019.1 tr|D7L8X6|D7L8X6_ARALL Transcription initiation
factor IIB-2 OS=Arabidopsis lyrata subsp. lyrata GN=,92.02,0,no
description,Cyclin-like; TRANSCRIPTION INITIATION FACTOR
IIB-RELATED,Transcription factor TFIIB; ,CUFF.5743.1
(720 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66310 homologue to UniRef100_P48513 Cluster: Transcri... 1174 0.0
gnl|LJGI|TC80160 homologue to UniRef100_P48513 Cluster: Transcri... 161 7e-39
gnl|LJGI|TC81989 homologue to UniRef100_P48513 Cluster: Transcri... 145 4e-34
gnl|LJGI|TC72189 homologue to UniRef100_A7PWI7 Cluster: Chromoso... 62 5e-09
>gnl|LJGI|TC66310 homologue to UniRef100_P48513 Cluster: Transcription initiation
factor IIB; n=1; Glycine max|Rep: Transcription
initiation factor IIB - Glycine max (Soybean), partial
(62%)
Length = 766
Score = 1174 bits (592), Expect = 0.0
Identities = 592/592 (100%)
Strand = Plus / Plus
Query: 129 taggttgggactcgttgcaaccatcaaggatcgtgcaaatgagatatataagagggttga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taggttgggactcgttgcaaccatcaaggatcgtgcaaatgagatatataagagggttga 60
Query: 189 agatcaaaagtctagtagagggagaaatcaagacgctttattggctgcttgtctctacat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agatcaaaagtctagtagagggagaaatcaagacgctttattggctgcttgtctctacat 120
Query: 249 tgcttgccgacaggaagacaaacctcgtactgtaaaggaaatttgctctattgccaatgg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcttgccgacaggaagacaaacctcgtactgtaaaggaaatttgctctattgccaatgg 180
Query: 309 ggctacaaagaaggaaattggccgagcaaaagaatacatagtgaaacaactgggtttgga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggctacaaagaaggaaattggccgagcaaaagaatacatagtgaaacaactgggtttgga 240
Query: 369 gaagggtcagtctgtggagatgggtacaatacatgctggggactttatgaggagattctg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagggtcagtctgtggagatgggtacaatacatgctggggactttatgaggagattctg 300
Query: 429 ttccaatctcggcatgaataatcaagctgttaaagctgctcaggaagctgttcagaaatc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccaatctcggcatgaataatcaagctgttaaagctgctcaggaagctgttcagaaatc 360
Query: 489 agaagaatttgatataaggaggagtcctatatcaattactgcagctgttatctacatcat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaagaatttgatataaggaggagtcctatatcaattactgcagctgttatctacatcat 420
Query: 549 aactcaactctctgatgataaaaaacctctcaaagatatatcaattgcaacaggagttgc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aactcaactctctgatgataaaaaacctctcaaagatatatcaattgcaacaggagttgc 480
Query: 609 agaaggaacaattaggaactcctacaaggatctttatccccatgtttcaaaaataatacc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agaaggaacaattaggaactcctacaaggatctttatccccatgtttcaaaaataatacc 540
Query: 669 aacttggtatgctaaggaggaggatttgaagaacctttccagtccttgaatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacttggtatgctaaggaggaggatttgaagaacctttccagtccttgaatt 592
>gnl|LJGI|TC80160 homologue to UniRef100_P48513 Cluster: Transcription initiation
factor IIB; n=1; Glycine max|Rep: Transcription
initiation factor IIB - Glycine max (Soybean), partial
(32%)
Length = 351
Score = 161 bits (81), Expect = 7e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 atgatttctaaccctaaaggcggctccggcgatttcctctcctcctccctcggccgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgatttctaaccctaaaggcggctccggcgatttcctctcctcctccctcggccgctgg 330
Query: 61 cagaatcgcggctccaacccc 81
|||||||||||||||||||||
Sbjct: 331 cagaatcgcggctccaacccc 351
>gnl|LJGI|TC81989 homologue to UniRef100_P48513 Cluster: Transcription initiation
factor IIB; n=1; Glycine max|Rep: Transcription
initiation factor IIB - Glycine max (Soybean), partial
(13%)
Length = 445
Score = 145 bits (73), Expect = 4e-34
Identities = 109/121 (90%)
Strand = Plus / Plus
Query: 598 acaggagttgcagaaggaacaattaggaactcctacaaggatctttatccccatgtttca 657
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 10 acaggagttgcagaaggaaccattaggaactcatacaaggatctttacccccatgtttcg 69
Query: 658 aaaataataccaacttggtatgctaaggaggaggatttgaagaacctttccagtccttga 717
||||||||||||| |||||||| || || |||||||| |||||||||| ||| ||||||
Sbjct: 70 aaaataataccaaactggtatgcaaaagaagaggatttaaagaacctttgcagcccttga 129
Query: 718 a 718
|
Sbjct: 130 a 130
>gnl|LJGI|TC72189 homologue to UniRef100_A7PWI7 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 489
Score = 61.9 bits (31), Expect = 5e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 24 ctccggcgatttcctctcctcctccctcggccgctggcagaatcgcggctccaaccccga 83
|||||| || |||||||| | |||||||||||||||||||||||||| || ||||| ||
Sbjct: 393 ctccggtgagttcctctcggcttccctcggccgctggcagaatcgcggttcgaaccctga 452
Query: 84 tcg 86
|||
Sbjct: 453 tcg 455