Miyakogusa Predicted Gene
- Lj0g3v0101809.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0101809.1 Non Chatacterized Hit- tr|D8RPF0|D8RPF0_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,56.96,4e-19,no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RNA-binding domain, RBD,NULL;
RRM,RNA,NODE_40706_length_490_cov_160.493881.path3.1
(498 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57417 similar to UniRef100_A7R1R9 Cluster: Chromosome... 955 0.0
gnl|LJGI|TC80789 similar to UniRef100_P93396 Cluster: Transforme... 682 0.0
>gnl|LJGI|TC57417 similar to UniRef100_A7R1R9 Cluster: Chromosome chr4 scaffold_373,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_373, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (71%)
Length = 1156
Score = 955 bits (482), Expect = 0.0
Identities = 494/498 (99%)
Strand = Plus / Plus
Query: 1 atgtcggattctccagtaagaaggaattcaaggtctccttctccatggagagctcagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atgtcggattctccagtaagaaggaattcaaggtctccttctccatggagagctcagtca 167
Query: 61 cgatccaggtctaggtctccaaggcctaagtctaggtccccgaggcctaagtcaaggtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cgatccaggtctaggtctccaaggcctaagtctaggtccccgaggcctaagtcaaggtcc 227
Query: 121 ccaagggctaagtctaggtccccccggcctaggtcgaggtccccaagacctaggtctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccaagggctaagtctaggtccccccggcctaggtcgaggtccccaagacctaggtctagg 287
Query: 181 tcaagatcgcttgagaagcaaaggcccaggtcccgctccagaagccgtggcaggtcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaagatcgcttgagaagcaaaggcccaggtcccgctccagaagccgtggcaggtcaaga 347
Query: 241 tcaaggagtcctgaggatagaaatggtgggaatactctttatgtgactgggctatcttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcaaggagtcctgaggatagaaatggtgggaatactctttatgtgactgggctatcttca 407
Query: 301 agggtcactgagagagacctagaggagcatttcgctaaggaaggaaaagttgcttcatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agggtcactgagagagacctagaggagcatttcgctaaggaaggaaaagttgcttcatgt 467
Query: 361 tttctcgtggtggagcctcgaacacgtatttctcgtggatttgcttttattacgatggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttctcgtggtggagcctcgaacacgtatttctcgtggatttgcttttattacgatggac 527
Query: 421 actgttgaggttgcaaaccgctgtttcaagtatctcaatcaatctgttttagagtgtcgc 480
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 528 actgttgaggatgcaaaccgctgtgtcaagtatctcaatcaatctgttttagagggtcgc 587
Query: 481 tatctcactgttgagcgg 498
||| ||||||||||||||
Sbjct: 588 tatatcactgttgagcgg 605
>gnl|LJGI|TC80789 similar to UniRef100_P93396 Cluster: Transformer-SR
ribonucleoprotein; n=1; Nicotiana tabacum|Rep:
Transformer-SR ribonucleoprotein - Nicotiana tabacum
(Common tobacco), partial (43%)
Length = 634
Score = 682 bits (344), Expect = 0.0
Identities = 374/384 (97%)
Strand = Plus / Plus
Query: 115 aggtccccaagggctaagtctaggtccccccggcctaggtcgaggtccccaagacctagg 174
|||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| |
Sbjct: 178 aggtccccaaggcctaagtctaggtcccccaggcctaagtcaaggtccccaagacctaag 237
Query: 175 tctaggtcaagatcgcttgagaagcaaaggcccaggtcccgctccagaagccgtggcagg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tctaggtcaagatcgcttgagaagcaaaggcccaggtcccgctccagaagccgtggcagg 297
Query: 235 tcaagatcaaggagtcctgaggatagaaatggtgggaatactctttatgtgactgggcta 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcaagatcaaggagtcctgaggatagaaatggtgggaatactctttatgtgactgggcta 357
Query: 295 tcttcaagggtcactgagagagacctagaggagcatttcgctaaggaaggaaaagttgct 354
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctccaagggtcactgagagagacctagaggagcatttcgctaaggaaggaaaagttgct 417
Query: 355 tcatgttttctcgtggtggagcctcgaacacgtatttctcgtggatttgcttttattacg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcatgttttctcgtggtggagcctcgaacacgtatttctcgtggatttgcttttattacg 477
Query: 415 atggacactgttgaggttgcaaaccgctgtttcaagtatctcaatcaatctgttttagag 474
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 atggacactgttgaggatgcaaaccgctgtgtcaagtatctcaatcaatctgttttagag 537
Query: 475 tgtcgctatctcactgttgagcgg 498
|||||||| ||||||||||||||
Sbjct: 538 ggtcgctatatcactgttgagcgg 561