Miyakogusa Predicted Gene

Lj0g3v0101459.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0101459.1 Non Chatacterized Hit- tr|D8SK47|D8SK47_SELML
Putative uncharacterized protein OS=Selaginella
moelle,30.8,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL,CUFF.5697.1
         (720 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS362311 similar to UniRef100_Q1RSH7 Cluster: General t...    96   4e-19

>gnl|LJGI|FS362311 similar to UniRef100_Q1RSH7 Cluster: General transcription factor
           IIH component, related; n=1; Medicago truncatula|Rep:
           General transcription factor IIH component, related -
           Medicago truncatula (Barrel medic), partial (20%)
          Length = 754

 Score = 95.6 bits (48), Expect = 4e-19
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                       
Query: 635 accttattaataagactaggagactgaaagaggctatatcacaactatattctaaacttg 694
           ||||||||| ||||||   ||||||||||||||||||||||||| | || ||||||||||
Sbjct: 738 accttattagtaagacagcgagactgaaagaggctatatcacaaatttactctaaacttg 679

                               
Query: 695 aggagataaaggtatctgca 714
           |||| |||||||||||||||
Sbjct: 678 aggaaataaaggtatctgca 659