Miyakogusa Predicted Gene
- Lj0g3v0100959.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0100959.1 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.61,2e-18,RETICULON-RELATED (PLANT),NULL;
RETICULON,Reticulon; seg,NULL; Reticulon,Reticulon,CUFF.5655.1
(1386 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS329266 similar to UniRef100_A7PJ84 Cluster: Chromosom... 1229 0.0
gnl|LJGI|FS355570 436 e-121
gnl|LJGI|FS330226 similar to UniRef100_A7PJ84 Cluster: Chromosom... 268 9e-71
gnl|LJGI|TC61257 similar to UniRef100_A7PYY4 Cluster: Chromosome... 101 1e-20
>gnl|LJGI|FS329266 similar to UniRef100_A7PJ84 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 727
Score = 1229 bits (620), Expect = 0.0
Identities = 620/620 (100%)
Strand = Plus / Plus
Query: 173 gttcttctgatcggagcagatctcgaacctcttccaccttggctcgcatcggtgaaaatg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gttcttctgatcggagcagatctcgaacctcttccaccttggctcgcatcggtgaaaatg 167
Query: 233 gaattatagagcctattcgcatatctctcgacctggttccttcaccaaccaccatcaaac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gaattatagagcctattcgcatatctctcgacctggttccttcaccaaccaccatcaaac 227
Query: 293 tcccatcaccatcattatcatcgcgttcacctctctcccttctgcgttctcctaactcct 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcccatcaccatcattatcatcgcgttcacctctctcccttctgcgttctcctaactcct 287
Query: 353 gtctcccactccgggagcttctcctcatgtctccttctccggcgaggaagtccaagccac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtctcccactccgggagcttctcctcatgtctccttctccggcgaggaagtccaagccac 347
Query: 413 ggttcgacgatgagctcctggaggcaggttccggtgttcgccgccggtgtaagagccgag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggttcgacgatgagctcctggaggcaggttccggtgttcgccgccggtgtaagagccgag 407
Query: 473 gggcgcagatggggttgctctgttcgcccaggagctcgcggaggtcgaggcgggaagaga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gggcgcagatggggttgctctgttcgcccaggagctcgcggaggtcgaggcgggaagaga 467
Query: 533 aggaggttgggttggtggtggatgaggctggaaaacagaggaagaggaggcacagtggaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aggaggttgggttggtggtggatgaggctggaaaacagaggaagaggaggcacagtggaa 527
Query: 593 gacccagaaaggaaaaactcagcttggtcccttttcaaccaccttcaatttcttcgtctc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gacccagaaaggaaaaactcagcttggtcccttttcaaccaccttcaatttcttcgtctc 587
Query: 653 ctccaaaatctgaagaagaaactggaggtgatttagatcgtgttggacaattcattactg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctccaaaatctgaagaagaaactggaggtgatttagatcgtgttggacaattcattactg 647
Query: 713 atttaatcatgtggagagatgtgtcaaaatcagccttttggtttgggtttgggtctcttt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atttaatcatgtggagagatgtgtcaaaatcagccttttggtttgggtttgggtctcttt 707
Query: 773 gtttcttgtcttctttcttc 792
||||||||||||||||||||
Sbjct: 708 gtttcttgtcttctttcttc 727
Score = 135 bits (68), Expect = 8e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 68 gcattccaatcttacctcaatctcatcactcacttgcattcatggattcttattcttcac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcattccaatcttacctcaatctcatcactcacttgcattcatggattcttattcttcac 62
Query: 128 attcagct 135
||||||||
Sbjct: 63 attcagct 70
>gnl|LJGI|FS355570
Length = 599
Score = 436 bits (220), Expect = e-121
Identities = 220/220 (100%)
Strand = Plus / Minus
Query: 1167 gtgcttgaagctgagattgttggatagatggagcgcctgccctcacaagaagatagtggt 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gtgcttgaagctgagattgttggatagatggagcgcctgccctcacaagaagatagtggt 540
Query: 1227 cgcatcagcacttattgccttttggaaattatctactataaagactcgaatcttcacagg 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cgcatcagcacttattgccttttggaaattatctactataaagactcgaatcttcacagg 480
Query: 1287 atttatactgcttgtaatagccagatattgtcggcaaaatgtcatgcaacaagtagaaga 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atttatactgcttgtaatagccagatattgtcggcaaaatgtcatgcaacaagtagaaga 420
Query: 1347 tggagaagcacaactgggagagaagggacaaaaatagaca 1386
||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggagaagcacaactgggagagaagggacaaaaatagaca 380
>gnl|LJGI|FS330226 similar to UniRef100_A7PJ84 Cluster: Chromosome chr12 scaffold_18,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_18, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 787
Score = 268 bits (135), Expect = 9e-71
Identities = 209/235 (88%), Gaps = 9/235 (3%)
Strand = Plus / Plus
Query: 662 ctgaagaagaaactggaggtgatttagatcgtgttggacaattcattactgatttaatca 721
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct: 11 ctgaagaagaaactggaggtgatttagatcatgttgggcagttcattactgatttaatca 70
Query: 722 tgtggag---------agatgtgtcaaaatcagccttttggtttgggtttgggtctcttt 772
||||||| ||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 71 tgtggagagtcaggagagatgtgtcaaaatcgagcttttggtttggtctcgggtctcttt 130
Query: 773 gtttcttgtcttctttcttcactaaaggagtcaacttcagcatcttctctgccttatgtc 832
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
Sbjct: 131 gtttcttgtcttctttcttcaccaaaggagtcaacttcagtatcatctctgccttatcgc 190
Query: 833 agttggcaattctcttgttggctttttcattcttctcaaattcagtttctcaaag 887
| |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 191 aattggcaattctcttgttggccttttcattcttctcaagttcagtttctcaaag 245
Score = 204 bits (103), Expect = 1e-51
Identities = 166/186 (89%), Gaps = 2/186 (1%)
Strand = Plus / Plus
Query: 1100 tttttgtcagcttcagtgtaccaaagctttattcttgctactctgatcagatcaaccagc 1159
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttttgtcagcttcagtatcccaaagctttattcttgctactctgatcagatcaaccagc 307
Query: 1160 gagctaagtgcttgaagctgagattgttggatagatggagcgcctgccctcacaagaaga 1219
||||| |||||||||| || || ||||||| | |||||| || ||| ||||||||||||
Sbjct: 308 gagctgagtgcttgaaattgcgactgttggacacatggagtgcttgcactcacaagaaga 367
Query: 1220 tagtggtcgcatcagcacttattgccttttggaaattatctactataaagactcgaatct 1279
|| ||||||||||||| | |||||||||||||| |||||||| ||||||||||||| |
Sbjct: 368 ta--ggtcgcatcagcaatcattgccttttggaatctatctactctaaagactcgaatat 425
Query: 1280 tcacag 1285
||||||
Sbjct: 426 tcacag 431
>gnl|LJGI|TC61257 similar to UniRef100_A7PYY4 Cluster: Chromosome chr4 scaffold_39,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_39, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 718
Score = 101 bits (51), Expect = 1e-20
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 1287 atttatactgcttgtaatagccagatattgtcggcaaaatgtcatgcaacaagtagaaga 1346
||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 671 atttatattgcttgtaatagccagatatagtcggcaaaatgtaatacaacaagtagaaga 612
Query: 1347 tggagaa 1353
|||||||
Sbjct: 611 tggagaa 605