Miyakogusa Predicted Gene

Lj0g3v0098669.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0098669.1 Non Chatacterized Hit- tr|I1L2S3|I1L2S3_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,66.07,0.000000000002,no description,DNA-binding pseudobarrel
domain,CUFF.5526.1
         (207 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82071 weakly similar to UniRef100_A2Q2N6 Cluster: Tra...    74   4e-13
gnl|LJGI|DC596542 weakly similar to UniRef100_A2Q2N6 Cluster: Tr...    52   1e-06

>gnl|LJGI|TC82071 weakly similar to UniRef100_A2Q2N6 Cluster: Transcriptional factor
           B3; n=1; Medicago truncatula|Rep: Transcriptional factor
           B3 - Medicago truncatula (Barrel medic), partial (24%)
          Length = 744

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 53  atggtggtgatgtgtcaaacccagtgtttctcaagcctccagatg 97
           ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 188 atggtggtgatatgtcaaacccaatgtttctcaagcctccagatg 232


>gnl|LJGI|DC596542 weakly similar to UniRef100_A2Q2N6 Cluster: Transcriptional factor
           B3; n=1; Medicago truncatula|Rep: Transcriptional factor
           B3 - Medicago truncatula (Barrel medic), partial (20%)
          Length = 409

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 140 atatttggtttgaaaagggttggaaagaatttgc 173
           ||||||||||| ||||||||||| ||||||||||
Sbjct: 289 atatttggtttcaaaagggttgggaagaatttgc 322