Miyakogusa Predicted Gene
- Lj0g3v0095179.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0095179.1 tr|B9IIE5|B9IIE5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_576428 PE=4
SV=1,24.46,0.00000008,PPR,Pentatricopeptide repeat; PPR:
pentatricopeptide repeat domain,Pentatricopeptide repeat;
coiled-,gene.g7263.t1.1
(1095 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79149 weakly similar to UniRef100_A7R2K2 Cluster: Chr... 1455 0.0
gnl|LJGI|BW626131 similar to UniRef100_A7P1K5 Cluster: Chromosom... 408 e-113
gnl|LJGI|TC70800 similar to UniRef100_A7P1K5 Cluster: Chromosome... 78 1e-13
>gnl|LJGI|TC79149 weakly similar to UniRef100_A7R2K2 Cluster: Chromosome chr10
scaffold_433, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_433, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (51%)
Length = 936
Score = 1455 bits (734), Expect = 0.0
Identities = 734/734 (100%)
Strand = Plus / Plus
Query: 1 atggcgtcgacaccgttttctgcgatcctccgccacaagttccagaacctcaccgcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 atggcgtcgacaccgttttctgcgatcctccgccacaagttccagaacctcaccgcaaac 262
Query: 61 tttcagcttctgagactataccgctccgcctccaccaccgtcacgaagcggagagacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcagcttctgagactataccgctccgcctccaccaccgtcacgaagcggagagacctc 322
Query: 121 tactccagaatcagccctctcggagacccttctgtcagcgttgttcccgttctcgaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tactccagaatcagccctctcggagacccttctgtcagcgttgttcccgttctcgaaaaa 382
Query: 181 tgggtccaacagggtaacgctatcaaggagaagcagctccagctcatcgtcaaaactctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgggtccaacagggtaacgctatcaaggagaagcagctccagctcatcgtcaaaactctc 442
Query: 241 cgcacccggaaacgcttcactcatgcacttcaggtttctgagtggatgagtagcaaaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cgcacccggaaacgcttcactcatgcacttcaggtttctgagtggatgagtagcaaaggg 502
Query: 301 ctctgcccaatttcgccgggtgaccgagccgtgcagctaggtcttatcggtagagttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctgcccaatttcgccgggtgaccgagccgtgcagctaggtcttatcggtagagttcat 562
Query: 361 ggactggagagtgcagagagctattttcagaatttgagtgatattgacaaaactgaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggactggagagtgcagagagctattttcagaatttgagtgatattgacaaaactgaaaaa 622
Query: 421 gtccatggtgcccttttgaattgttacgtgagagcaggattagttgacaagtcactctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtccatggtgcccttttgaattgttacgtgagagcaggattagttgacaagtcactctcc 682
Query: 481 cagatgcagaagatgaaggaaatgggttatgtttcttgtctcaattacaacaatataatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagatgcagaagatgaaggaaatgggttatgtttcttgtctcaattacaacaatataatg 742
Query: 541 tgcctctacgcacaaagtgaccaacatgagaaagtacctggggttttagcaatgatgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgcctctacgcacaaagtgaccaacatgagaaagtacctggggttttagcaatgatgaaa 802
Query: 601 gaggacggtgtttctcctgacattttcagctacagggtttgcataaactcttatggcgcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaggacggtgtttctcctgacattttcagctacagggtttgcataaactcttatggcgcc 862
Query: 661 agatctgacctcgagaatatggagaaactgttggaggaaattgaaagagaaggccacaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 agatctgacctcgagaatatggagaaactgttggaggaaattgaaagagaaggccacaca 922
Query: 721 tgcgtggattggat 734
||||||||||||||
Sbjct: 923 tgcgtggattggat 936
>gnl|LJGI|BW626131 similar to UniRef100_A7P1K5 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 482
Score = 408 bits (206), Expect = e-113
Identities = 349/396 (88%), Gaps = 3/396 (0%)
Strand = Plus / Plus
Query: 11 caccgttttctgcgatcctccgccacaagttccagaacctcaccgcaaactttcagcttc 70
||||||| ||||| ||||||||| |||||||||| | | ||||||| | ||||||||||
Sbjct: 83 caccgttctctgcaatcctccgcaacaagttccatagcttcaccgccacatttcagcttc 142
Query: 71 tgagactataccgctccgcctccaccaccgtcacga---agcggagagacctctactcca 127
|||||| || |||||||||||||||| ||||||| | |||||| ||||||||||||
Sbjct: 143 tgagaccgtattgctccgcctccaccactgtcacgattaaccggagaaacctctactcca 202
Query: 128 gaatcagccctctcggagacccttctgtcagcgttgttcccgttctcgaaaaatgggtcc 187
|||||||||| ||||| ||||||||| ||||||| ||||| ||||||||||| ||| |||
Sbjct: 203 gaatcagccccctcggtgacccttctctcagcgtggttcctgttctcgaaaactggctcc 262
Query: 188 aacagggtaacgctatcaaggagaagcagctccagctcatcgtcaaaactctccgcaccc 247
|| ||||| |||| ||| ||| || ||||||||| |||||||||||||| |||||||
Sbjct: 263 aagagggtcacgccgtcagggaccaggagctccagcgtatcgtcaaaactctacgcaccc 322
Query: 248 ggaaacgcttcactcatgcacttcaggtttctgagtggatgagtagcaaagggctctgcc 307
|||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 323 ggaaacgcttcactcaagctctacaggtttctgaatggatgagtagcaaagggctctgcc 382
Query: 308 caatttcgccgggtgaccgagccgtgcagctaggtcttatcggtagagttcatggactgg 367
|||||| ||| |||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 383 caattttgccaggtgaccgagccgtgcagctagaacttattggtagagttcgtggactgg 442
Query: 368 agagtgcagagagctattttcagaatttgagtgata 403
||||||||||||||||||||||||||||||||||||
Sbjct: 443 agagtgcagagagctattttcagaatttgagtgata 478
>gnl|LJGI|TC70800 similar to UniRef100_A7P1K5 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 704
Score = 77.8 bits (39), Expect = 1e-13
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 992 atgaagctgagaaattacttggtgagtgggagttatctg 1030
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaagctgagaaattacttggtgagtgggagttatctg 39