Miyakogusa Predicted Gene

Lj0g3v0093449.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0093449.1 CUFF.5139.1
         (358 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78176 similar to UniRef100_UPI0000F30B23 Cluster: Tra...   517   e-146

>gnl|LJGI|TC78176 similar to UniRef100_UPI0000F30B23 Cluster: Transcription factor
           7-like 2 (HMG box transcription factor 4) (T-
           cell-specific transcription factor 4) (TCF-4) (hTCF-4).;
           n=1; Bos taurus|Rep: Transcription factor 7-like 2 (HMG
           box transcription factor 4) (T- cell-specific
           transcription factor 4) (TCF-4) (hTCF-4). - Bos Taurus,
           partial (5%)
          Length = 778

 Score =  517 bits (261), Expect = e-146
 Identities = 261/261 (100%)
 Strand = Plus / Plus

                                                                       
Query: 98  tctctgatttccctcgttgtttcagccatcaaagaaagaggaagagatcgaaagagagag 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctctgatttccctcgttgtttcagccatcaaagaaagaggaagagatcgaaagagagag 498

                                                                       
Query: 158 atcaaatttcttcccccatctctgatttccctcgttgtttcagccatcaacctccagcca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcaaatttcttcccccatctctgatttccctcgttgtttcagccatcaacctccagcca 558

                                                                       
Query: 218 ccacgccaccggagctctaccatgcgaacgtcgttctctctccttctctttcacactttc 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccacgccaccggagctctaccatgcgaacgtcgttctctctccttctctttcacactttc 618

                                                                       
Query: 278 cctcccgatatgggttttccttgctttgtttatttcccatcttaggcgattgtgtggatt 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cctcccgatatgggttttccttgctttgtttatttcccatcttaggcgattgtgtggatt 678

                                
Query: 338 tctttggaacaaaagggtgat 358
           |||||||||||||||||||||
Sbjct: 679 tctttggaacaaaagggtgat 699



 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 171 ccccatctctgatttccctcgttgtttcagccatcaa 207
           |||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccccatctctgatttccctcgttgtttcagccatcaa 470