Miyakogusa Predicted Gene

Lj0g3v0092909.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0092909.1 tr|G7LG09|G7LG09_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3
SV=1,68.75,0,RNA_pol_Rpb1_2,RNA polymerase, alpha subunit;
RNA_pol_Rpb1_5,RNA polymerase Rpb1, domain 5; RNA_pol_,CUFF.5297.1
         (4752 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59796 weakly similar to UniRef100_A7Q5G0 Cluster: DNA...   993   0.0  

>gnl|LJGI|TC59796 weakly similar to UniRef100_A7Q5G0 Cluster: DNA-directed RNA
            polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA
            polymerase - Vitis vinifera (Grape), partial (7%)
          Length = 1597

 Score =  993 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                        
Query: 4235 aagaaggctcttccaagtccaatgcttggaagtcaaacatagagcaacgtagtgatgagg 4294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aagaaggctcttccaagtccaatgcttggaagtcaaacatagagcaacgtagtgatgagg 60

                                                                        
Query: 4295 attcttggacctctcagaaactgaaagctgatgttatccaggactcttccaagccaagct 4354
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   attcttggagctctcagaaactgaaagctgatgttatccaggactcttccaagccaagct 120

                                                                        
Query: 4355 cttggggagctaaacccaagtcgaatgactcctccaattggggaagaaataaagatgaaa 4414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cttggggagctaaacccaagtcgaatgactcctccaattggggaagaaataaagatgaaa 180

                                                                        
Query: 4415 tacaggatgttgtgtctagaagagccgaagatgattcttggagctctaagaaacagctta 4474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 181  tacaggatgttgtgtctagaagagccgaagatgattcttggagctctaagaaacagcttg 240

                                                                        
Query: 4475 gttctgatgctacccaagaagactcttccaagttcagcttttggggaggtaacaaagata 4534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gttctgatgctacccaagaagactcttccaagttcagcttttggggaggtaacaaagata 300

                                                                        
Query: 4535 caacaaagccaaagtcaaatgattggtccagttggggtggaaatagagatggaatacagg 4594
            |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 301  caacaaagccgaagtcaaatgattggtccagctggggtggaaatagagatggaatacagg 360

                                                                        
Query: 4595 atggtgggtctaaaagagcccaagatgattcttggagctctcaaaaagatgttaccagag 4654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  atggtgggtctaaaagagcccaagatgattcttggagctctcaaaaagatgttaccagag 420

                                                                        
Query: 4655 aaagctcttctaaggttgatgcatggggtgcaaataatgaggcatcaaaccccaagtcaa 4714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aaagctcttctaaggttgatgcatggggtgcaaataatgaggcatcaaaccccaagtcaa 480

                                                 
Query: 4715 atgattggtcagcctgggggaaaaataaagatggaac 4751
            |||||||||||||||||||||||||||||||||||||
Sbjct: 481  atgattggtcagcctgggggaaaaataaagatggaac 517