Miyakogusa Predicted Gene
- Lj0g3v0092629.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0092629.1 Non Chatacterized Hit- tr|I0YLZ5|I0YLZ5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea C-,48.65,4e-19,no
description,Nucleotide-binding, alpha-beta plait; no description,Zinc
finger, CCHC-type; RRM,RNA ,CUFF.5082.1
(549 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57214 similar to UniRef100_O23645 Cluster: RSZp21 pro... 1088 0.0
gnl|LJGI|TC68962 similar to UniRef100_Q2QKC3 Cluster: Pre-mRNA p... 779 0.0
gnl|LJGI|TC72680 similar to UniRef100_O23646 Cluster: RSZp22 pro... 54 9e-07
>gnl|LJGI|TC57214 similar to UniRef100_O23645 Cluster: RSZp21 protein; n=1;
Arabidopsis thaliana|Rep: RSZp21 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (72%)
Length = 927
Score = 1088 bits (549), Expect = 0.0
Identities = 549/549 (100%)
Strand = Plus / Plus
Query: 1 atgtctcgggtttatgttgggaatttggaccctcgtgtctctgagagggatctcgaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atgtctcgggtttatgttgggaatttggaccctcgtgtctctgagagggatctcgaagac 162
Query: 61 gaatttcgcttgtatggtgttctgcgaagtgtctgggttgcacgtagaccaccaggatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaatttcgcttgtatggtgttctgcgaagtgtctgggttgcacgtagaccaccaggatat 222
Query: 121 gcatttctcgagtttgatgataagagggatgcactggatgcaatccatgctttggatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gcatttctcgagtttgatgataagagggatgcactggatgcaatccatgctttggatgga 282
Query: 181 aaaaatggctggcgtgtagagctttctcataattctaagggtggtggaggaggccgtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaaaatggctggcgtgtagagctttctcataattctaagggtggtggaggaggccgtggt 342
Query: 241 ggtgggcgtgggcgtggaggtgaggacctgaaatgctatgaatgtggtgaacctggacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggtgggcgtgggcgtggaggtgaggacctgaaatgctatgaatgtggtgaacctggacac 402
Query: 301 tttgctcgtgagtgtcgctcccgcggtggttcaagaggcctgggaagtggaaggagacga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttgctcgtgagtgtcgctcccgcggtggttcaagaggcctgggaagtggaaggagacga 462
Query: 361 agtcctagtccttaccggcgtcgtagaagtccaagttatggttatggccgtaggagttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agtcctagtccttaccggcgtcgtagaagtccaagttatggttatggccgtaggagttat 522
Query: 421 agtcctcgtgggaggagatctccaagacctcgtagcataacacctcctcttcgtggtcgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtcctcgtgggaggagatctccaagacctcgtagcataacacctcctcttcgtggtcgc 582
Query: 481 agcaacagcaggtcccctccataccgtcatgctcgtcgtgtttcaccttatgctaatgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agcaacagcaggtcccctccataccgtcatgctcgtcgtgtttcaccttatgctaatgga 642
Query: 541 gattaagat 549
|||||||||
Sbjct: 643 gattaagat 651
>gnl|LJGI|TC68962 similar to UniRef100_Q2QKC3 Cluster: Pre-mRNA processing factor;
n=1; Triticum aestivum|Rep: Pre-mRNA processing factor -
Triticum aestivum (Wheat), partial (45%)
Length = 587
Score = 779 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 157 gatgcaatccatgctttggatggaaaaaatggctggcgtgtagagctttctcataattct 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gatgcaatccatgctttggatggaaaaaatggctggcgtgtagagctttctcataattct 108
Query: 217 aagggtggtggaggaggccgtggtggtgggcgtgggcgtggaggtgaggacctgaaatgc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aagggtggtggaggaggccgtggtggtgggcgtgggcgtggaggtgaggacctgaaatgc 168
Query: 277 tatgaatgtggtgaacctggacactttgctcgtgagtgtcgctcccgcggtggttcaaga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tatgaatgtggtgaacctggacactttgctcgtgagtgtcgctcccgcggtggttcaaga 228
Query: 337 ggcctgggaagtggaaggagacgaagtcctagtccttaccggcgtcgtagaagtccaagt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ggcctgggaagtggaaggagacgaagtcctagtccttaccggcgtcgtagaagtccaagt 288
Query: 397 tatggttatggccgtaggagttatagtcctcgtgggaggagatctccaagacctcgtagc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tatggttatggccgtaggagttatagtcctcgtgggaggagatctccaagacctcgtagc 348
Query: 457 ataacacctcctcttcgtggtcgcagcaacagcaggtcccctccataccgtcatgctcgt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ataacacctcctcttcgtggtcgcagcaacagcaggtcccctccataccgtcatgctcgt 408
Query: 517 cgtgtttcaccttatgctaatggagattaagat 549
|||||||||||||||||||||||||||||||||
Sbjct: 409 cgtgtttcaccttatgctaatggagattaagat 441
>gnl|LJGI|TC72680 similar to UniRef100_O23646 Cluster: RSZp22 protein; n=1;
Arabidopsis thaliana|Rep: RSZp22 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (89%)
Length = 913
Score = 54.0 bits (27), Expect = 9e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 269 tgaaatgctatgaatgtggtgaacctggacactttgctcgtga 311
||||||| ||||| |||||||||||||| || |||||||||||
Sbjct: 373 tgaaatgttatgagtgtggtgaacctggtcattttgctcgtga 415
Score = 52.0 bits (26), Expect = 4e-06
Identities = 104/130 (80%)
Strand = Plus / Plus
Query: 88 agtgtctgggttgcacgtagaccaccaggatatgcatttctcgagtttgatgataagagg 147
||||| ||||||||||| ||||||||||| ||||| ||| | || ||||||||| |
Sbjct: 171 agtgtttgggttgcacggagaccaccaggttatgcttttattgactttgatgatcgccga 230
Query: 148 gatgcactggatgcaatccatgctttggatggaaaaaatggctggcgtgtagagctttct 207
||||||| |||||| || | || || ||||| || ||||| ||| | || |||||||||
Sbjct: 231 gatgcacaggatgccattcgtgaattagatggcaagaatggttggagggttgagctttct 290
Query: 208 cataattcta 217
|| |||||||
Sbjct: 291 cacaattcta 300