Miyakogusa Predicted Gene
- Lj0g3v0090719.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0090719.1 Non Chatacterized Hit- tr|I1NVI5|I1NVI5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,52.81,3e-19,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; BRX,Bre,CUFF.4915.1
(510 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69697 similar to UniRef100_A7PQZ5 Cluster: Chromosome... 967 0.0
gnl|LJGI|TC71090 similar to UniRef100_A7PQZ5 Cluster: Chromosome... 325 2e-88
gnl|LJGI|TC80419 similar to UniRef100_A7PQZ5 Cluster: Chromosome... 176 9e-44
>gnl|LJGI|TC69697 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 798
Score = 967 bits (488), Expect = 0.0
Identities = 488/488 (100%)
Strand = Plus / Plus
Query: 23 gagcaattagaaatgtcaaatcaccttctctagcttcttttggttccaatccttcttcca 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagcaattagaaatgtcaaatcaccttctctagcttcttttggttccaatccttcttcca 60
Query: 83 atgaaattggctatgcttccattgatcgattaaatattcaagcaacaagcccagaagcag 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgaaattggctatgcttccattgatcgattaaatattcaagcaacaagcccagaagcag 120
Query: 143 acttagctggatcaaataaccagtcactttcaaatggatcaagcacggtcagtaatcgca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acttagctggatcaaataaccagtcactttcaaatggatcaagcacggtcagtaatcgca 180
Query: 203 atgcaggtcacactaaacagagccagtcagattctaataatagaaatgggagcagaacaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgcaggtcacactaaacagagccagtcagattctaataatagaaatgggagcagaacaa 240
Query: 263 aggatagtgaatctcgtaatgagagtgaatgggttgagcaagatgaacctggtgtatata 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggatagtgaatctcgtaatgagagtgaatgggttgagcaagatgaacctggtgtatata 300
Query: 323 ttaccctcacctccctaccaggaggtgtaaaagatcttaagagagttcgattcagtcgaa 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttaccctcacctccctaccaggaggtgtaaaagatcttaagagagttcgattcagtcgaa 360
Query: 383 agcggttcagtgagaaacaagcagagcaatggtgggctgagaaccgggcaagagtatatg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agcggttcagtgagaaacaagcagagcaatggtgggctgagaaccgggcaagagtatatg 420
Query: 443 aacagtacaatgtacgaatgattgacaagtccagtgttggtgttgggagtgatgacctgg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacagtacaatgtacgaatgattgacaagtccagtgttggtgttgggagtgatgacctgg 480
Query: 503 ctcattga 510
||||||||
Sbjct: 481 ctcattga 488
>gnl|LJGI|TC71090 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 817
Score = 325 bits (164), Expect = 2e-88
Identities = 347/408 (85%)
Strand = Plus / Plus
Query: 103 attgatcgattaaatattcaagcaacaagcccagaagcagacttagctggatcaaataac 162
||||||| ||| | ||||||| ||| ||||| ||| |||||||| | ||||||||| ||
Sbjct: 40 attgatcaattgactattcaaacaagaagccaagagtcagacttaacaggatcaaatgac 99
Query: 163 cagtcactttcaaatggatcaagcacggtcagtaatcgcaatgcaggtcacactaaacag 222
|||| |||||||||||||||||||| ||| || || | |||||||||| ||||||
Sbjct: 100 cagttgctttcaaatggatcaagcactatcaccaaccgtagtgcaggtcacggtaaacac 159
Query: 223 agccagtcagattctaataatagaaatgggagcagaacaaaggatagtgaatctcgtaat 282
|| || ||| || | | || ||||||||| || ||||||||||| || ||||| |||
Sbjct: 160 agtcaatcaaatgcaactagcagaaatgggtacaaaacaaaggataacgagtctcgaaat 219
Query: 283 gagagtgaatgggttgagcaagatgaacctggtgtatatattaccctcacctccctacca 342
|| | |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct: 220 gaaactgaatgggttgagcaagatgaacccggtgtatacattactctcacctctctacca 279
Query: 343 ggaggtgtaaaagatcttaagagagttcgattcagtcgaaagcggttcagtgagaaacaa 402
|||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 280 ggagatgtaatagatcttaagagagttcgcttcagtcgaaagcggtttagtgagaaacaa 339
Query: 403 gcagagcaatggtgggctgagaaccgggcaagagtatatgaacagtacaatgtacgaatg 462
||||| | ||||||||||||||| ||||| ||||||||||||| |||| | || || ||
Sbjct: 340 gcagaaccatggtgggctgagaatcgggccagagtatatgaactgtaccacgtgcgcttg 399
Query: 463 attgacaagtccagtgttggtgttgggagtgatgacctggctcattga 510
||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct: 400 attgacaagtccagtattggtgttgggagtgaggaactggctcattga 447
>gnl|LJGI|TC80419 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 588
Score = 176 bits (89), Expect = 9e-44
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 411 atggtgggctgagaaccgggcaagagtatatgaacagtacaatgtacgaatgattgacaa 470
||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct: 2 atggtgggctgagaaccggncaagagtatatgaaccgtaccatgtacgaatgattgacaa 61
Query: 471 gtccagtgttggtgttgggagtgatgacctggctcattga 510
||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gtccagtgttggtgttgggagtgatgacctggctcattga 101