Miyakogusa Predicted Gene
- Lj0g3v0090229.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0090229.1 tr|F5CAE5|F5CAE5_FUNHY Pentatricopeptide repeat
protein 79 (Fragment) OS=Funaria hygrometrica PE=2 S,28.38,2e-18,PPR:
pentatricopeptide repeat domain,Pentatricopeptide repeat; seg,NULL; no
description,Tetratricope,CUFF.4871.1
(1258 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65316 similar to UniRef100_A7P5P0 Cluster: Chromosome... 844 0.0
gnl|LJGI|FS356522 similar to UniRef100_A7P5P0 Cluster: Chromosom... 480 e-134
gnl|LJGI|TC61267 270 2e-71
gnl|LJGI|TC61073 182 4e-45
>gnl|LJGI|TC65316 similar to UniRef100_A7P5P0 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (30%)
Length = 739
Score = 844 bits (426), Expect = 0.0
Identities = 662/741 (89%), Gaps = 16/741 (2%)
Strand = Plus / Plus
Query: 312 gtattttgaatgcggttctgtagatgaagcaatcaatatgtttgataatatgcctgaacg 371
||||||| ||||||||||||||||||| |||||||| |||| ||||||||||| || ||
Sbjct: 2 gtattttaaatgcggttctgtagatgacgcaatcaaagtgttcgataatatgccagagcg 61
Query: 372 caatttgactacttgggatactatgataacacagcttacaaagaatgggtttgcagaaga 431
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 62 caatttgactacttgggatactatgataacgcaacttactaagaatgggtttgcagaaga 121
Query: 432 ctcaattgatctatttactcagtttaaaaaattgggactgaaacctgattgtcagatgtt 491
||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||
Sbjct: 122 ctcaattgatctattcactcaatttaaaaaattgggac---aacctgatggtcagatgtt 178
Query: 492 cattgcggttttttctgcatgtagtatgctgggagatcttgacgagggaatgctgcactt 551
||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 179 cattgcggtttttgctgtatgcagtatgctgggagatcttgatgagggaatgctgcactt 238
Query: 552 tgaatccatgaggaaggattatggaattgggccatctatggctcattttgccagtgtagt 611
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 239 tgaatccatgagcaaggattatggaattgtaccatctatggctcattttgtcagtgtagt 298
Query: 612 agacatgattggtagtattgggcatcttgatgaagcctttgaattcattgaaaagatgcc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agacatgattggtagtattgggcatcttgatgaagcctttgaattcattgaaaagatgcc 358
Query: 672 aattgaaccaagtgctgatgtatgggagtctttgatgaatttctgcagagtccatggaaa 731
|||||||||||||| |||||||||| || ||||||||||||| || ||||| ||||||||
Sbjct: 359 aattgaaccaagtgttgatgtatggaagactttgatgaatttttgtagagttcatggaaa 418
Query: 732 cactgagcttggtgaccgttgtgctgaactggttgagctgctggatccctctcgcttaaa 791
||||||||| || || |||||||||||||| ||||||| |||||||||| ||| ||| ||
Sbjct: 419 cactgagctcggcgatcgttgtgctgaactagttgagcagctggatcccactctcttgaa 478
Query: 792 tgagaaatcaaagcctggccttttaccggtaaaaccgtcagactc------------aga 839
|||| | |||||| |||||||||||||||| |||| |||||||| |||
Sbjct: 479 tgaggagtcaaaggttggccttttaccggtagaaccttcagactcgataaaagagagaga 538
Query: 840 cttgaaattagcgagcaaaagtctgctggaaggtaggagccgagtccatagttatcgagc 899
||||||||| || |||| |||||| |||| |||||||||||||||| ||||||||
Sbjct: 539 aaagaaattagcaagtaaaaatctgctagaagttaggagccgagtccatgaatatcgagc 598
Query: 900 aggagatacttctcatcctgaaaatgaccagctttatgctcttcttagaggtatgaagcc 959
| |||||||||||||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 599 acgagatacttctcatcctgaaaatgacaagatttatgctcttcttagaggtctg-agac 657
Query: 960 acaaatgaaagaagctggctatattcctgagactaaatttgtgttgcatgacattgacca 1019
||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||||
Sbjct: 658 acaaatgaaagaagctggctatattccagaggtaaagtttgtgctgcatgacattgacca 717
Query: 1020 ggaaagcaaagaagatgctct 1040
|||||||||||||||||||||
Sbjct: 718 ggaaagcaaagaagatgctct 738
>gnl|LJGI|FS356522 similar to UniRef100_A7P5P0 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (14%)
Length = 665
Score = 480 bits (242), Expect = e-134
Identities = 320/346 (92%)
Strand = Plus / Minus
Query: 913 catcctgaaaatgaccagctttatgctcttcttagaggtatgaagccacaaatgaaagaa 972
||||||||||||||| || |||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 665 catcctgaaaatgacaagatttatgctcttcttagaggtctgaggacacaaatgaaagaa 606
Query: 973 gctggctatattcctgagactaaatttgtgttgcatgacattgaccaggaaagcaaagaa 1032
|||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||
Sbjct: 605 gctggctatattccagaggtaaagtttgtgctgcatgacattgaccaggaaagcaaagaa 546
Query: 1033 gatgctcttcttgctcacagtgagagacttgctgtcgctgaagctctgcttagcactcct 1092
||||||||||||||||||||||||||||||||||| ||| | | |||| |||||| | ||
Sbjct: 545 gatgctcttcttgctcacagtgagagacttgctgttgcttatggtctgattagcagttct 486
Query: 1093 gctcgctctcctattagggtaattaagaatctccgtgcttgcggtgattgccatactgca 1152
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 485 gctcgctctcctattagggtgattaagaatctccgtgtttgcggtgattgccatactgca 426
Query: 1153 ctaaagattatttctaagcttgtgggaagagaactcatcattcgagatgctaaaaggttc 1212
|| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 425 ctgaagattatttctaagattgtgggaagagagttcatcattcgagatgctaaaaggttc 366
Query: 1213 caccattttaaagatgggctatgctcctgtcgggattattggtgaa 1258
||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 365 caccactttaaagatgggctatgctcctgccgggattattggtgaa 320
>gnl|LJGI|TC61267
Length = 801
Score = 270 bits (136), Expect = 2e-71
Identities = 169/180 (93%)
Strand = Plus / Plus
Query: 4 gctggctctcatctatcaagtaatgcaaagcctgatggtgaatcagtggaggcatcttct 63
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct: 622 gctggctctcatctatcaagtaatgcaaagcctgatggcgaatcagttgaggcatctact 681
Query: 64 gatagtccatatagaggtacacttgaggaactagatggtttctgcatggagggtaaagtg 123
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct: 682 gataatccatatagaggtacacttgaggagctagatggtttctgcatggagggaaaactg 741
Query: 124 aaggaagcagttgaagttttggaattgttggtaaagcttcatatttctgtggatttgcct 183
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 742 aaggaagcagttgaagttttggaattgttggttaagcttcaaattcatgtggatttgcct 801
>gnl|LJGI|TC61073
Length = 738
Score = 182 bits (92), Expect = 4e-45
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 4 gctggctctcatctatcaagtaatgcaaagcctgatggtgaatcagtggaggcatcttct 63
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct: 627 gctggctctcatctatcaagtaatgcaaagcctgatggcgaatcagttgaggcatctact 686
Query: 64 gatagtccatatagaggtacacttgaggaactagatggtttctgcatggagg 115
|||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 687 gataatccatatagaggtacacttgaggagctagatggtttctgcatggagg 738