Miyakogusa Predicted Gene
- Lj0g3v0087929.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0087929.1 Non Chatacterized Hit- tr|I1QFD0|I1QFD0_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.41,3e-17,FAMILY NOT NAMED,NULL; zf-LSD1,Zinc finger,
LSD1-type; LSD1: zinc finger domain, LSD1 subclass,Zinc ,CUFF.4702.1
(261 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO012790 similar to UniRef100_A7QC17 Cluster: Chromosom... 517 e-146
gnl|LJGI|TC60650 similar to UniRef100_A7QC17 Cluster: Chromosome... 517 e-146
gnl|LJGI|GO032574 similar to UniRef100_A7QC17 Cluster: Chromosom... 494 e-139
gnl|LJGI|GO012063 similar to UniRef100_A7QC17 Cluster: Chromosom... 82 2e-15
gnl|LJGI|TC71369 similar to UniRef100_A7QC17 Cluster: Chromosome... 82 2e-15
gnl|LJGI|TC67625 similar to UniRef100_Q8W195 Cluster: Zinc finge... 82 2e-15
gnl|LJGI|TC63763 similar to UniRef100_A7QC17 Cluster: Chromosome... 76 1e-13
>gnl|LJGI|GO012790 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (81%)
Length = 792
Score = 517 bits (261), Expect = e-146
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggca 363
Query: 61 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 423
Query: 121 atgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgct 483
Query: 181 agtgtcagatgttcctgctgtcacactgtaaaccttgctccagctaatcaagttgcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtgtcagatgttcctgctgtcacactgtaaaccttgctccagctaatcaagttgcccac 543
Query: 241 gtcccttgtgggaattgccgg 261
|||||||||||||||||||||
Sbjct: 544 gtcccttgtgggaattgccgg 564
>gnl|LJGI|TC60650 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (90%)
Length = 767
Score = 517 bits (261), Expect = e-146
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggca 346
Query: 61 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 406
Query: 121 atgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgct 466
Query: 181 agtgtcagatgttcctgctgtcacactgtaaaccttgctccagctaatcaagttgcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtgtcagatgttcctgctgtcacactgtaaaccttgctccagctaatcaagttgcccac 526
Query: 241 gtcccttgtgggaattgccgg 261
|||||||||||||||||||||
Sbjct: 527 gtcccttgtgggaattgccgg 547
>gnl|LJGI|GO032574 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (92%)
Length = 808
Score = 494 bits (249), Expect = e-139
Identities = 258/261 (98%)
Strand = Plus / Plus
Query: 1 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 243 atgcagagccaacttgtgtgtaatggttgtaggagcattctgctttaccctagagggaca 302
Query: 61 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 accaatgtttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggat 362
Query: 121 atgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgct 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 363 atgtctcaactttattgtggaggctgtgggacattgctaatgtacacacgtggagctgct 422
Query: 181 agtgtcagatgttcctgctgtcacactgtaaaccttgctccagctaatcaagttgcccac 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 agtgtcagatgttcctgctgtcacactgtaaaccttgccccagctaatcaagttgcccac 482
Query: 241 gtcccttgtgggaattgccgg 261
|||||||||||||||||||||
Sbjct: 483 gtcccttgtgggaattgccgg 503
>gnl|LJGI|GO012063 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (84%)
Length = 759
Score = 81.8 bits (41), Expect = 2e-15
Identities = 155/193 (80%)
Strand = Plus / Plus
Query: 8 gccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggcaaccaatg 67
|||| |||||||||||||| ||||||| ||| || |||| |||||||| || |||||
Sbjct: 71 gccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagccggcaatg 130
Query: 68 tttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggatatgtctc 127
|||| ||||| | ||| || || ||| |||| ||||| | || ||||| ||||| |
Sbjct: 131 tttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaaatgtcac 190
Query: 128 aactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgctagtgtca 187
| |||||||||||||||||||||||||| |||||||| || ||||||| | || || |
Sbjct: 191 agctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacgagcgtga 250
Query: 188 gatgttcctgctg 200
|||||||||||||
Sbjct: 251 gatgttcctgctg 263
>gnl|LJGI|TC71369 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 852
Score = 81.8 bits (41), Expect = 2e-15
Identities = 155/193 (80%)
Strand = Plus / Plus
Query: 8 gccaacttgtgtgtaatggttgtaggagcattctgctttaccctagaggggcaaccaatg 67
|||| |||||||||||||| ||||||| ||| || |||| |||||||| || |||||
Sbjct: 144 gccagcttgtgtgtaatgggtgtaggaacatcttggtttatcctagaggagccggcaatg 203
Query: 68 tttgttgtgcattgtgcaacacaatcaccgctgtgcctccacccggaatggatatgtctc 127
|||| ||||| | ||| || || ||| |||| ||||| | || ||||| ||||| |
Sbjct: 204 tttgctgtgcttggtgtaatgtgattacccctgttcctcctgctgggatggaaatgtcac 263
Query: 128 aactttattgtggaggctgtaggacattgctaatgtacacacgtggagctgctagtgtca 187
| |||||||||||||||||||||||||| |||||||| || ||||||| | || || |
Sbjct: 264 agctttattgtggaggctgtaggacattactaatgtatgcaaatggagctacgagcgtga 323
Query: 188 gatgttcctgctg 200
|||||||||||||
Sbjct: 324 gatgttcctgctg 336
>gnl|LJGI|TC67625 similar to UniRef100_Q8W195 Cluster: Zinc finger protein LSD1; n=1;
Brassica oleracea|Rep: Zinc finger protein LSD1 -
Brassica oleracea (Wild cabbage), partial (50%)
Length = 829
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 221 cagctaatcaagttgcccacgtcccttgtgggaattgccgg 261
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cagctaatcaagttgcccacgtcccttgtgggaattgccgg 49
>gnl|LJGI|TC63763 similar to UniRef100_A7QC17 Cluster: Chromosome chr10 scaffold_76,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_76, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 1026
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 115 atggatatgtctcaactttattgtggaggctgtaggacattgctaatgtacacacgtgga 174
||||| ||||| || |||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 245 atggaaatgtcacagctttattgtggaggctgtaggacattactaatgtatgcaaatgga 304
Query: 175 gctgctagtgtcagatgttcctgctg 200
||| | || || ||||||||||||||
Sbjct: 305 gctacgagcgtgagatgttcctgctg 330