Miyakogusa Predicted Gene
- Lj0g3v0085579.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0085579.1 Non Chatacterized Hit- tr|B4WH57|B4WH57_9SYNE
Putative uncharacterized protein OS=Synechococcus sp.
,32.49,2e-18,DUF1517,Protein of unknown function DUF1517; seg,NULL;
PROKAR_LIPOPROTEIN,NULL,CUFF.4519.1
(1053 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68409 weakly similar to UniRef100_A7Q5W5 Cluster: Chr... 1279 0.0
gnl|LJGI|GO006797 similar to UniRef100_A1A4B8 Cluster: Abcf1 pro... 141 1e-32
gnl|LJGI|TC68001 similar to UniRef100_A7Q5W5 Cluster: Chromosome... 52 7e-06
>gnl|LJGI|TC68409 weakly similar to UniRef100_A7Q5W5 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (43%)
Length = 731
Score = 1279 bits (645), Expect = 0.0
Identities = 645/645 (100%)
Strand = Plus / Plus
Query: 409 gcagacacttcctctcgggaaggtgtgagccatctattgatagagacaatagaggctttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcagacacttcctctcgggaaggtgtgagccatctattgatagagacaatagaggctttg 62
Query: 469 gataggcaacctagttctcttattgcaggatattcatctgttgatctaatgaaggatagg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gataggcaacctagttctcttattgcaggatattcatctgttgatctaatgaaggatagg 122
Query: 529 gagggtgtgaagaaatacttcaatcaactatcaaatgaagaaaggggaaaatttgatgaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gagggtgtgaagaaatacttcaatcaactatcaaatgaagaaaggggaaaatttgatgaa 182
Query: 589 gtgacattagtaaagagatccagtgttaatgtgtttagcaatgaagacacattgtggaat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtgacattagtaaagagatccagtgttaatgtgtttagcaatgaagacacattgtggaat 242
Query: 649 gcaaaggaaagtataaatgtaccacagaaacttgaagaggaacttctgaatgggtctggc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcaaaggaaagtataaatgtaccacagaaacttgaagaggaacttctgaatgggtctggc 302
Query: 709 aacgagtacatagcgttggatataaaggaaagtgcagatgaatcacagaaatttgaagaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aacgagtacatagcgttggatataaaggaaagtgcagatgaatcacagaaatttgaagaa 362
Query: 769 gaggaacttctcaaagtgtttggtaacgagtacatagtggtaacaatcttggtagctgct 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaggaacttctcaaagtgtttggtaacgagtacatagtggtaacaatcttggtagctgct 422
Query: 829 aaaggaacacataagcttcctaacaacaatggagctgaagatttgaagaaagccttacaa 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaggaacacataagcttcctaacaacaatggagctgaagatttgaagaaagccttacaa 482
Query: 889 aagcttagatccattctccttctcccaagcaaattattagctggtgaggttttatggacg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagcttagatccattctccttctcccaagcaaattattagctggtgaggttttatggacg 542
Query: 949 ccacaaaaagaggatgaaagtcttccaggacggaaactacttaaagactaccctcattta 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ccacaaaaagaggatgaaagtcttccaggacggaaactacttaaagactaccctcattta 602
Query: 1009 gtagagtctatgaaaagctttagggttaagaaagaggaatagaac 1053
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gtagagtctatgaaaagctttagggttaagaaagaggaatagaac 647
>gnl|LJGI|GO006797 similar to UniRef100_A1A4B8 Cluster: Abcf1 protein; n=1; Mus
musculus|Rep: Abcf1 protein - Mus musculus (Mouse),
partial (6%)
Length = 618
Score = 141 bits (71), Expect = 1e-32
Identities = 104/115 (90%)
Strand = Plus / Plus
Query: 316 aatactaatactctctgcaagcttcaggttgcggtgtttggtgggaataagggaagctca 375
||||||| ||||||||||||||||||||||||| ||||||| |||| ||| ||||||||
Sbjct: 436 aatactattactctctgcaagcttcaggttgcgatgtttggcgggagtaaaggaagctcg 495
Query: 376 gtacaaagcgatctaactaggattgccaaagctgcagacacttcctctcgggaag 430
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct: 496 atacaaagggatctaactaggattgcaaaagctgcagatacttcctctagggaag 550
Score = 127 bits (64), Expect = 2e-28
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 42 tgtgctgttgttactagcatgcagactcaacttggctttggccgcctcaggaggcgtgat 101
||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 168 tgtgctgttgttactggcatgcaaactcaacttggcttcagcctcctcaggaggcgtgat 227
Query: 102 gggaggggatttctttgattctggttcttcct 133
||||||| ||||||||||||||| ||||||||
Sbjct: 228 gggagggaatttctttgattctgattcttcct 259
>gnl|LJGI|TC68001 similar to UniRef100_A7Q5W5 Cluster: Chromosome chr14 scaffold_54,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_54, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 861
Score = 52.0 bits (26), Expect = 7e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 799 tacatagtggtaacaatcttggtagctgctaaaggaacacataagcttcctaacaacaat 858
||||||||| |||||||||||| |||||| ||||| |||||| ||||||| || ||||
Sbjct: 124 tacatagtgataacaatcttggcagctgccgaaggagaacataaacttcctagcatcaat 183
Query: 859 gg 860
||
Sbjct: 184 gg 185