Miyakogusa Predicted Gene

Lj0g3v0085339.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0085339.1 tr|Q2HU07|Q2HU07_MEDTR Polynucleotidyl
transferase, Ribonuclease H fold OS=Medicago truncatula
GN=Mt,41.05,5e-19,UBN2_3,NULL; seg,NULL,CUFF.4496.1
         (634 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78686 similar to UniRef100_Q2HT49 Cluster: Integrase,...   565   e-160

>gnl|LJGI|TC78686 similar to UniRef100_Q2HT49 Cluster: Integrase, catalytic region;
           n=1; Medicago truncatula|Rep: Integrase, catalytic
           region - Medicago truncatula (Barrel medic), partial
           (4%)
          Length = 770

 Score =  565 bits (285), Expect = e-160
 Identities = 308/316 (97%), Gaps = 6/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatggttgtttcttggattctgagatctctatcaccaaccatataccagagtcagagt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||      ||
Sbjct: 282 atgatggttgtttcttggcttctgagatctctatcaccaaccatataccaga------gt 335

                                                                       
Query: 61  gtgatatggatggacactgcttttgccatatggaatgacttgaaggacagattttctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgatatggatggacactgcttttgccatatggaatgacttgaaggacagattttctcaa 395

                                                                       
Query: 121 gaggatatgcttagggtagcagatttgcaagagatgatttcttcattcaagcaaggagag 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggggatatgcttagggtagcagatttgcaagagatgatttcttcattcaagcaaggagag 455

                                                                       
Query: 181 ctgactgtgacagattactttacacaactgaggaccctttgggatgagcttgacattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctgactgtgacagattactttacacaactgaggaccctttgggatgagcttgacattttt 515

                                                                       
Query: 241 cgccctctacctgcttgtgtttgtgccttcaagtgcacatgcagtgcaacttccagccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cgccctctacctgcttgtgtttgtgccttcaagtgcacatgcagtgcaacttccagccat 575

                           
Query: 301 gctatgtataaaagcc 316
           ||||||||||||||||
Sbjct: 576 gctatgtataaaagcc 591