Miyakogusa Predicted Gene

Lj0g3v0085329.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0085329.1 tr|D7KZK3|D7KZK3_ARALL NC domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,69.84,2e-19,seg,NULL; LRAT,LRAT-like domain; no
description,NULL; NC DOMAIN-CONTAINING PROTEIN,NULL; HRAS-LIKE
S,CUFF.4508.1
         (351 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74013 similar to UniRef100_A7QHR8 Cluster: Chromosome...   369   e-102

>gnl|LJGI|TC74013 similar to UniRef100_A7QHR8 Cluster: Chromosome chr8 scaffold_99,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_99, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 486

 Score =  369 bits (186), Expect = e-102
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggttgctttctaacagaatcactagagagagcctgaaaccaggggatcacatctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 atggggttgctttctaacagaatcactagagagagcctgaaaccaggggatcacatctat 177

                                                                       
Query: 61  tcttggagaactgcatatatatatgcccatcacggaatttatattggtgatgacaaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tcttggagaactgcatatatatatgcccatcacggaatttatattggtgatgacaaagtc 237

                                                                       
Query: 121 attcacttcactagacgagggcaagaagtaggaactggtactgtgctagatcttctcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 attcacttcactagacgagggcaagaagtaggaactggtactgtgctagatcttctcctc 297

                 
Query: 181 atcagt 186
           ||||||
Sbjct: 298 atcagt 303



 Score =  305 bits (154), Expect = 1e-82
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                       
Query: 187 cccaacctgtgcagcagcgtctcaagatccacatggggtcgtctcctcatgtctgaactg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cccaacctgtgcagcagcgtctcaagatccacatggggtcgtctcctcatgtctgaactg 392

                                                                       
Query: 247 tttcctagctggcggtgtcctctaccggttcgagtacgccgtctcccccactctcttcct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttcctagctggcggtgtcctctaccggttcgagtacgccgtctcccccactctcttcct 452

                                             
Query: 307 cgcaaaagcccgcggcggaacatgtactctcgca 340
           ||||||||||||||||||||||||||||||||||
Sbjct: 453 cgcaaaagcccgcggcggaacatgtactctcgca 486