Miyakogusa Predicted Gene

Lj0g3v0084929.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0084929.1 Non Chatacterized Hit- tr|I3SW75|I3SW75_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,64.52,0.00000000002, ,CUFF.4470.1
         (197 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotei...   383   e-106
gnl|LJGI|TC63372                                                      119   6e-27
gnl|LJGI|TC66034                                                       88   2e-17

>gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotein; n=1; Human
           immunodeficiency virus 1|Rep: Envelope glycoprotein -
           Human immunodeficiency virus 1, partial (8%)
          Length = 687

 Score =  383 bits (193), Expect = e-106
 Identities = 196/197 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaactttgacaaatgttctagagtgcatttcagacaacaacctagaatctggggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 atggcaactttgacaaatgttctagagtgcatttcagacaacaacctagaatctggggat 207

                                                                       
Query: 61  ctaattaatgagattgaagatcgcattcttgagctaagtaagcagaaggtaagtagcgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctaattaatgagattgaagatcgcattcttgagctaagtaagcagaaggtaagtagcgtt 267

                                                                       
Query: 121 tgtactcgcaccaggtccatcatccaaaagtgcaacaacctgaaggaaagaaatgtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 268 tgtactcgcaccaggtccatcatccaaaagtgcaacaacctgaaggaaagagatgtggta 327

                            
Query: 181 accaaaacctgctgatg 197
           |||||||||||||||||
Sbjct: 328 accaaaacctgctgatg 344


>gnl|LJGI|TC63372 
          Length = 728

 Score =  119 bits (60), Expect = 6e-27
 Identities = 144/172 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   actttgacaaatgttctagagtgcatttcagacaacaacctagaatctggggatctaatt 66
           ||||||||||||||||||  || |||||||||||||||  ||||||||| || |||| ||
Sbjct: 195 actttgacaaatgttctactgtccatttcagacaacaagttagaatctgtgggtctactt 254

                                                                       
Query: 67  aatgagattgaagatcgcattcttgagctaagtaagcagaaggtaagtagcgtttgtact 126
           |||||||||  |||||||||||||||||||| || ||  || || ||||| ||||| |||
Sbjct: 255 aatgagattcgagatcgcattcttgagctaattaggcgaaatgtcagtagtgtttgcact 314

                                                               
Query: 127 cgcaccaggtccatcatccaaaagtgcaacaacctgaaggaaagaaatgtgg 178
            ||||  |||||||| || ||| |||||||| ||| | | ||||||||||||
Sbjct: 315 ggcacttggtccatcctcaaaatgtgcaacaccctaaggaaaagaaatgtgg 366


>gnl|LJGI|TC66034 
          Length = 677

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                       
Query: 28  tgcatttcagacaacaacctagaatctggggatctaattaatgagattgaagatcgcatt 87
           ||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 254 tgcatttcagacaacaatctagaatctgaggatctaattaatgagattcaacatcgcatt 313