Miyakogusa Predicted Gene
- Lj0g3v0084479.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0084479.1 tr|A9TMH9|A9TMH9_PHYPA ATP-binding cassette
transporter, subfamily A, member 6, group ATH protein
Pp,49.51,3e-19,seg,NULL; ABC TRANSPORTER,NULL; ATP-BINDING CASSETTE
TRANSPORTER SUBFAMILY A (ABCA),ABC transporter ,CUFF.4437.1
(354 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC593589 similar to UniRef100_A7QI68 Cluster: Chromosom... 200 4e-51
gnl|LJGI|GO037036 weakly similar to UniRef100_UPI00001636D4 Clus... 62 2e-09
gnl|LJGI|TC66696 weakly similar to UniRef100_A7QI68 Cluster: Chr... 62 2e-09
gnl|LJGI|BP075808 weakly similar to UniRef100_A7QI68 Cluster: Ch... 56 1e-07
>gnl|LJGI|DC593589 similar to UniRef100_A7QI68 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 156
Score = 200 bits (101), Expect = 4e-51
Identities = 145/156 (92%), Gaps = 4/156 (2%)
Strand = Plus / Plus
Query: 8 atcctcctcctgcacctgcaagcttctcgactcaagcaaacgctcttctcagaaaaaatc 67
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 atcctcctcctgcacctgacagcttctcgactcaagcaaacgctcttctcacaaaaaatc 60
Query: 68 taacattccagaaacggaacgtgaagaccaacattc-ggttgattct--gtttcctct-g 123
|||||||||| ||||||||||||||||||||||||| || | |||| ||||||||| |
Sbjct: 61 taacattccacaaacggaacgtgaagaccaacattcgggggggttctgcgtttcctctag 120
Query: 124 atcctctgcgtgttgctggttgtcctccaacgctta 159
||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcctctgcgtgttgctggttgtcctccaacgctta 156
>gnl|LJGI|GO037036 weakly similar to UniRef100_UPI00001636D4 Cluster: ATATH4 (ABC2
homolog 4); ATPase, coupled to transmembrane movement of
substances; n=1; Arabidopsis thaliana|Rep: ATATH4 (ABC2
homolog 4); ATPase, coupled to transmembrane movement of
substances - Arabidopsis thaliana, partial (8%)
Length = 664
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 21 acctgcaagcttctcgactcaagcaaacgctcttctcagaaaaaatctaacattccagaa 80
|||||| || |||| ||||||||||||||| |||||||| || ||| |||| | ||||||
Sbjct: 139 acctgcgagattctggactcaagcaaacgcgcttctcaggaagaatttaacctaccagaa 198
Query: 81 acggaacgtgaagac 95
|| |||||||||||
Sbjct: 199 gcgaaacgtgaagac 213
>gnl|LJGI|TC66696 weakly similar to UniRef100_A7QI68 Cluster: Chromosome chr17
scaffold_101, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_101, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (6%)
Length = 755
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 21 acctgcaagcttctcgactcaagcaaacgctcttctcagaaaaaatctaacattccagaa 80
|||||| || |||| ||||||||||||||| |||||||| || ||| |||| | ||||||
Sbjct: 83 acctgcgagattctggactcaagcaaacgcgcttctcaggaagaatttaacctaccagaa 142
Query: 81 acggaacgtgaagac 95
|| |||||||||||
Sbjct: 143 gcgaaacgtgaagac 157
>gnl|LJGI|BP075808 weakly similar to UniRef100_A7QI68 Cluster: Chromosome chr17
scaffold_101, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_101, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (6%)
Length = 307
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 36 gactcaagcaaacgctcttctcagaaaaaatctaacattccagaaacggaacgtgaagac 95
||||||||||||||| |||||||| || ||| |||| | |||||| || |||||||||||
Sbjct: 17 gactcaagcaaacgcgcttctcaggaagaatttaacctaccagaagcgaaacgtgaagac 76