Miyakogusa Predicted Gene

Lj0g3v0084339.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0084339.1 Non Chatacterized Hit- tr|G7JS00|G7JS00_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,56.25,0.000002,
,CUFF.4422.1
         (367 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62726 similar to UniRef100_Q850H7 Cluster: Gag-pol po...   165   2e-40
gnl|LJGI|TC79059                                                       58   4e-08

>gnl|LJGI|TC62726 similar to UniRef100_Q850H7 Cluster: Gag-pol polyprotein; n=1;
           Vitis vinifera|Rep: Gag-pol polyprotein - Vitis vinifera
           (Grape), partial (41%)
          Length = 855

 Score =  165 bits (83), Expect = 2e-40
 Identities = 232/277 (83%), Gaps = 6/277 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  caatccaccacaatatgtttatttctttcattaaaaaa-ggatttgatgagatatgtatg 71
           ||||||||| ||||||||||| ||||||||| |||||  |||||||| |||||||| | |
Sbjct: 463 caatccacctcaatatgtttagttctttcatgaaaaactggatttgacgagatatgaagg 404

                                                                       
Query: 72  gcagcccgattatcacaccaaagtttcatcgcacatg--ctctcaattcgcagctc--ta 127
           |||||| ||||||||||||| |||||||| | | ||   |||||||||| ||  ||  | 
Sbjct: 403 gcagcctgattatcacaccatagtttcattggagatatcctctcaattcccatgtcactc 344

                                                                       
Query: 128 aagatctccccaaaccacataagttcacaggtattttgagtcatcgcccgatattcagct 187
           ||||| |  || | ||||||||||||||| ||| |||||| ||| || ||||||||||||
Sbjct: 343 aagatttgtcctacccacataagttcacatgtagtttgagccatagcacgatattcagct 284

                                                                       
Query: 188 ta-gcacttgattgtgtcatcacattttgcttcttgcttttccatgatattaaattccct 246
           |  ||||| ||| ||| || |||||||||||||||||||||||| || |||||||| |||
Sbjct: 283 tctgcactagatcgtgccaccacattttgcttcttgcttttccaagaaattaaattacct 224

                                                
Query: 247 tccaaaagtacacaacagccaatggtggattttctat 283
            |||||| ||||||| ||||| |||||||||||||||
Sbjct: 223 cccaaaaatacacaatagccagtggtggattttctat 187


>gnl|LJGI|TC79059 
          Length = 479

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 51  ggatttgatgagatatgtatggcagcccgattatcacacca 91
           ||||| ||||||||||||| ||||||| |||||||||||||
Sbjct: 100 ggattggatgagatatgtagggcagcctgattatcacacca 60