Miyakogusa Predicted Gene

Lj0g3v0083899.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0083899.1 tr|A9TB49|A9TB49_PHYPA Histone transcription
regulator HIRA OS=Physcomitrella patens subsp. patens
G,51.14,0.000000000000003, ,CUFF.4400.1
         (267 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68857 similar to UniRef100_Q32SG6 Cluster: Protein HI...   333   3e-91

>gnl|LJGI|TC68857 similar to UniRef100_Q32SG6 Cluster: Protein HIRA; n=1; Zea
           mays|Rep: Protein HIRA - Zea mays (Maize), partial (12%)
          Length = 587

 Score =  333 bits (168), Expect = 3e-91
 Identities = 216/233 (92%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 34  gtgaagttcaaccattctatgtttagaaggaatatctctaatgctcaggaagtgaagtct 93
           |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |
Sbjct: 267 gtgaagttcaaccattctatgttctgaaggaatatctctaatgctcaggaagtgaagttt 326

                                                                       
Query: 94  gtgcaa-ttgggtggaccaattggtacctccaagactggaagaaaagagctgcagcctta 152
           |||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgcatgttgggtggaccaatttgtacctccaagactggaagaaaagagctgcagcctta 386

                                                                       
Query: 153 caatattattgcaattggtagtcaggatcgaactataacactgtggactacttcaagtcc 212
           |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 caatattattgtcattggtagtcaggatcgaactataacagtgtggactacttcaagtcc 446

                                                                
Query: 213 ccgccctctatttgtggctaagcannnnnnnactcaggctaagtattttttat 265
           ||||||||||||||||||||||||       |||||||||||| |||||||||
Sbjct: 447 ccgccctctatttgtggctaagcatttttttactcaggctaagcattttttat 499