Miyakogusa Predicted Gene
- Lj0g3v0083039.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0083039.1 CUFF.4349.1
(918 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76769 homeobox knotted-1-like protein KNOX2;homeobox ... 1754 0.0
gnl|LJGI|BP036080 similar to UniRef100_A3QNN5 Cluster: Homeodoma... 100 3e-20
gnl|LJGI|TC72803 UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox... 70 3e-11
gnl|LJGI|TC66466 similar to UniRef100_Q9SXV1 Cluster: KN1-type h... 70 3e-11
gnl|LJGI|TC79136 similar to UniRef100_A9CR84 Cluster: Class 2 kn... 66 4e-10
gnl|LJGI|TC61440 similar to UniRef100_A6XHG4 Cluster: Class II k... 66 4e-10
gnl|LJGI|TC70761 UniRef100_Q4VPF0 Cluster: Homeobox knotted-1-li... 56 4e-07
gnl|LJGI|TC79746 similar to UniRef100_A7QS15 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|TC76769 homeobox knotted-1-like protein KNOX2;homeobox transcription factor;
LjKN2
Length = 1740
Score = 1754 bits (885), Expect = 0.0
Identities = 907/917 (98%)
Strand = Plus / Plus
Query: 2 tgaaaactgaagccaccacctcgcagcttcttcacactccgattttccactaccctttga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgaaaactgaagccaccacctcgcagcttcttcacactccgattttccactaccctttga 699
Query: 62 tgagaggaaatcttatgcatcattctcagcaaggaggaagtgggagcccgagctctagcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgagaggaaatcttatgcatcattctcagcaaggaggaagtgggagcccgagctctagcg 759
Query: 122 aagttgaagccataaaagccaaaatccttgctcatcctcaatactctagtcttttagaag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aagttgaagccataaaagccaaaatccttgctcatcctcaatactctagtcttttagaag 819
Query: 182 cttacatggattgccaaaagataggtgctccaccggaagtggtggcgcgtctggtggcgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cttacatggattgccaaaagataggtgctccaccggaagtggtggcgcgtctggtggcgg 879
Query: 242 cgaggcaagagtttgaggcacggcggagatcttcagttagctcaagggaaaattccaaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 cgaggcaagagtttgaggcacggcggagatcttcagttagctcaagggaaaattccaaag 939
Query: 302 atccagaacttgatcaattcatggaagcatactatgacatgcttgtgaagtatagagagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 atccagaacttgatcaattcatggaagcatactatgacatgcttgtgaagtatagagagg 999
Query: 362 aattaacaaggcctatacaagaggctatggatttcatgcggaggattgaaactcagctta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 aattaacaaggcctatacaagaggctatggatttcatgcggaggattgaaactcagctta 1059
Query: 422 acatgctttgcaatggacccgtgaggatcttcaatgatgataaatgtgaaggcgtaggtt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 acatgctttgcaatggacccgtgaggatcttcaatgatgataaatgtgaaggcgtaggtt 1119
Query: 482 catcagaagaggatcaagacaacagtggtggagaaacagaactgcccgagattgatcccc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 catcagaagaggatcaagacaacagtggtggagaaacagaactgcccgagattgatcccc 1179
Query: 542 gggcagaagaccgtgaactcaaaactcacttgctcaagaaatacagtggttacttgagta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 gggcagaagaccgtgaactcaaaactcacttgctcaagaaatacagtggttacttgagta 1239
Query: 602 gccttaagcaagaactttccaagnnnnnnnngaaaggaaaactgcccaaagatgctagac 661
|||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 1240 gccttaagcaagaactttccgagaaaaaaaagaaaggaaaactgcccaaagatgctagac 1299
Query: 662 aaaagctgcttaactggtgggaattacattacaaatggccatatccttcggaatcagaga 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aaaagctgcttaactggtgggaattacattacaaatggccatatccttcggaatcagaga 1359
Query: 722 aggtggcattagctgaatcaactggtttggatcagaagcagataaacaactggttcatta 781
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 aggtggcattagctgagtcaactggtttggatcagaagcagataaacaactggttcatta 1419
Query: 782 atcaaaggaagaggcattggaaaccatctgaagacatgcagtttatggtgatggatggcc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 atcaaaggaagaggcattggaaaccatctgaagacatgcagtttatggtgatggatggcc 1479
Query: 842 tccatcctcaaaatgcaacactttatatggatggtcattacatggcggctgatggtcact 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 tccatcctcaaaatgcaacactttatatggatggtcattacatggcggctgatggtcact 1539
Query: 902 accgccttgggccatga 918
|||||||||||||||||
Sbjct: 1540 accgccttgggccatga 1556
>gnl|LJGI|BP036080 similar to UniRef100_A3QNN5 Cluster: Homeodomain protein Kn1; n=1;
Prunus dulcis|Rep: Homeodomain protein Kn1 - Prunus
dulcis (Almond) (Prunus amygdalus), partial (21%)
Length = 395
Score = 99.6 bits (50), Expect = 3e-20
Identities = 125/150 (83%)
Strand = Plus / Minus
Query: 687 acattacaaatggccatatccttcggaatcagagaaggtggcattagctgaatcaactgg 746
||||||||||||||| || || ||||||||| ||||| | || | || || |||| ||
Sbjct: 379 acattacaaatggccttacccatcggaatcacagaagcttgcgcttgcagaggcaacagg 320
Query: 747 tttggatcagaagcagataaacaactggttcattaatcaaaggaagaggcattggaaacc 806
| ||||||||||||| || ||||||||||| || ||||| ||||| |||| ||||||||
Sbjct: 319 tctggatcagaagcaaattaacaactggtttatcaatcagaggaaacggcactggaaacc 260
Query: 807 atctgaagacatgcagtttatggtgatgga 836
||||| |||||||| ||||||||||||||
Sbjct: 259 ttctgatgacatgcaatttatggtgatgga 230
>gnl|LJGI|TC72803 UniRef100_A5Y4H1 Cluster: Class I KNOX homeobox transcription
factor; n=1; Medicago truncatula|Rep: Class I KNOX
homeobox transcription factor - Medicago truncatula
(Barrel medic), partial (22%)
Length = 484
Score = 69.9 bits (35), Expect = 3e-11
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 736 gaatcaactggtttggatcagaagcagataaacaactggttcattaatcaaaggaagagg 795
||||| ||||| ||||||| |||||||||||||||||||||||| ||||| || || |
Sbjct: 34 gaatccactggattggatctgaagcagataaacaactggttcatcaatcagagaaaacgt 93
Query: 796 cattggaaaccatctgaagacatgcagtttatggtgatggatg 838
|||||||| || ||||| || ||||| ||| ||||||||||
Sbjct: 94 cattggaagccttctgaggatatgcaatttgctgtgatggatg 136
>gnl|LJGI|TC66466 similar to UniRef100_Q9SXV1 Cluster: KN1-type homeobox protein; n=1;
Nicotiana tabacum|Rep: KN1-type homeobox protein -
Nicotiana tabacum (Common tobacco), partial (64%)
Length = 1430
Score = 69.9 bits (35), Expect = 3e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 757 aagcagataaacaactggttcattaatcaaaggaagaggcattggaaaccatctgaaga 815
|||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 1098 aagcagatcaacaattggttcatcaatcagaggaaacggcattggaaaccatctgaaga 1156
Score = 52.0 bits (26), Expect = 6e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 301 gatccagaacttgatcaattcatggaagcatact 334
||||||||||||||| ||||||||||| ||||||
Sbjct: 639 gatccagaacttgatgaattcatggaatcatact 672
>gnl|LJGI|TC79136 similar to UniRef100_A9CR84 Cluster: Class 2 knotted1-like protein;
n=1; Nicotiana tabacum|Rep: Class 2 knotted1-like
protein - Nicotiana tabacum (Common tobacco), partial
(19%)
Length = 599
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 757 aagcagataaacaactggttcattaatcaaaggaagaggcattgg 801
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 192 aagcagataaacaactggttcattaatcaaagaaaaaggaattgg 236
>gnl|LJGI|TC61440 similar to UniRef100_A6XHG4 Cluster: Class II knotted-like homeobox
protein; n=1; Prunus persica|Rep: Class II knotted-like
homeobox protein - Prunus persica (Peach), partial (29%)
Length = 855
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 757 aagcagataaacaactggttcattaatcaaaggaagaggcattgg 801
|||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 321 aagcagataaacaactggttcattaatcaaagaaaaaggaattgg 365
>gnl|LJGI|TC70761 UniRef100_Q4VPF0 Cluster: Homeobox knotted-1-like protein KNOX3;
n=1; Lotus japonicus|Rep: Homeobox knotted-1-like
protein KNOX3 - Lotus japonicus, complete
Length = 1250
Score = 56.0 bits (28), Expect = 4e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 754 cagaagcagataaacaactggttcattaatcaaaggaagaggcattggaaaccatctgaa 813
|||||||| || ||||| ||||| |||||||| || || | |||||||||||||||||
Sbjct: 852 cagaagcaaattaacaattggtttattaatcagagaaaacgacattggaaaccatctgag 911
Query: 814 gacatgcagttt 825
|||||||||||
Sbjct: 912 aacatgcagttt 923
>gnl|LJGI|TC79746 similar to UniRef100_A7QS15 Cluster: Chromosome undetermined
scaffold_155, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_155,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (59%)
Length = 1268
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 757 aagcagataaacaactggttcattaatcaaaggaa 791
||||||||||| ||||||||||| |||||||||||
Sbjct: 863 aagcagataaataactggttcataaatcaaaggaa 897