Miyakogusa Predicted Gene
- Lj0g3v0081359.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0081359.1 Non Chatacterized Hit- tr|Q9LHP2|Q9LHP2_ARATH
Putative serine/arginine-rich protein OS=Arabidopsis
t,60.31,2e-18,seg,NULL; SERINE/ARGININE RICH SPLICING
FACTOR,NULL,CUFF.4434.1
(450 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68993 homologue to UniRef100_A7P058 Cluster: Chromoso... 892 0.0
gnl|LJGI|BP048709 similar to UniRef100_Q9SEU4 Cluster: Serine/ar... 488 e-137
gnl|LJGI|TC76785 similar to UniRef100_Q52B63 Cluster: Pre-mRNA-s... 404 e-112
gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recogn... 72 3e-12
gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome... 72 3e-12
>gnl|LJGI|TC68993 homologue to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 1057
Score = 892 bits (450), Expect = 0.0
Identities = 450/450 (100%)
Strand = Plus / Plus
Query: 1 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 422
Query: 61 aagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcgaaga 482
Query: 121 agatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgccac 542
Query: 181 agatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattcaaga 602
Query: 241 tctgtgtcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tctgtgtcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagg 662
Query: 301 gagaggtcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gagaggtcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagt 722
Query: 361 ccagctaaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccagctaaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggag 782
Query: 421 tcagcccgcattaggtcccctagtcagtga 450
||||||||||||||||||||||||||||||
Sbjct: 783 tcagcccgcattaggtcccctagtcagtga 812
>gnl|LJGI|BP048709 similar to UniRef100_Q9SEU4 Cluster: Serine/arginine-rich protein;
n=1; Arabidopsis thaliana|Rep: Serine/arginine-rich
protein - Arabidopsis thaliana (Mouse-ear cress),
partial (32%)
Length = 391
Score = 488 bits (246), Expect = e-137
Identities = 253/254 (99%), Gaps = 1/254 (0%)
Strand = Plus / Minus
Query: 1 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 194
Query: 61 aagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aagaagccaactgagatgaggcatagagagagaagtcggggtcggtcttatgatcgaaga 134
Query: 121 agatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agatctcctcctcgttattctcgttcaccccgctactcccgatctccaccaccacgccac 74
Query: 181 agatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattcaaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 73 agatctcgctctcgcagtcgtgactattattcccctcctcctaaacgcagggattcaa-a 15
Query: 241 tctgtgtcacctga 254
||||||||||||||
Sbjct: 14 tctgtgtcacctga 1
>gnl|LJGI|TC76785 similar to UniRef100_Q52B63 Cluster: Pre-mRNA-splicing factor
CWC22; n=1; Magnaporthe grisea|Rep: Pre-mRNA-splicing
factor CWC22 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea), partial (4%)
Length = 477
Score = 404 bits (204), Expect = e-112
Identities = 204/204 (100%)
Strand = Plus / Plus
Query: 247 tcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagggagagg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacctgaggagagaaggtacagtcgagaacgatcgtacacaccacgtagcagggagagg 60
Query: 307 tcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagtccagct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatactcacgctctccaccctataatggaggctcaagaagccgcagtcgtagtccagct 120
Query: 367 aaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggagtcagcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagtcgcagtccacagcagaagcccaagtccgatccacggtgatgttagggagtcagcc 180
Query: 427 cgcattaggtcccctagtcagtga 450
||||||||||||||||||||||||
Sbjct: 181 cgcattaggtcccctagtcagtga 204
>gnl|LJGI|TC62957 similar to UniRef100_Q10KQ7 Cluster: RNA recognition motif family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: RNA recognition motif family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(66%)
Length = 1273
Score = 71.9 bits (36), Expect = 3e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 60
||||| |||||||||||||| ||||||||| | ||||| || ||||| || |||||||||
Sbjct: 570 atggacggtcaaattcttcttggtcgtgagttaactgtggtgtttgccgaagaaaacaga 629
Query: 61 aagaagcc 68
||||||||
Sbjct: 630 aagaagcc 637
>gnl|LJGI|TC61975 similar to UniRef100_A7P058 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 1043
Score = 71.9 bits (36), Expect = 3e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 atggatggtcaaattcttctcggtcgtgagctgactgttgtctttgctgaggaaaacaga 60
||||| |||||||||||||| ||||||||| | ||||| || ||||| || |||||||||
Sbjct: 460 atggacggtcaaattcttcttggtcgtgagttaactgtggtgtttgccgaagaaaacaga 519
Query: 61 aagaagcc 68
||||||||
Sbjct: 520 aagaagcc 527