Miyakogusa Predicted Gene
- Lj0g3v0081029.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0081029.1 tr|B9IF24|B9IF24_POPTR Methionine sulfoxide
reductase type (Fragment) OS=Populus trichocarpa
GN=Ptrc,69.12,2e-19,no description,Peptide methionine sulphoxide
reductase MsrA; PEPTIDE METHIONINE SULFOXIDE REDUCTASE,,CUFF.4194.1
(290 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76804 similar to UniRef100_A7PBQ8 Cluster: Chromosome... 565 e-161
gnl|LJGI|TC63861 similar to UniRef100_A7PBQ8 Cluster: Chromosome... 165 2e-40
gnl|LJGI|BG662434 similar to UniRef100_A7PBQ8 Cluster: Chromosom... 163 7e-40
>gnl|LJGI|TC76804 similar to UniRef100_A7PBQ8 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (89%)
Length = 1267
Score = 565 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 3 gccctctatgaacctgttgaacagacttggatttggtagcacaaggtcaccggagaacat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccctctatgaacctgttgaacagacttggatttggtagcacaaggtcaccggagaacat 367
Query: 63 ggattcatccattgctcagggaccagatgatgacataccggcaccaggccagcagtttgc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggattcatccattgctcagggaccagatgatgacataccggcaccaggccagcagtttgc 427
Query: 123 gcagttcggtgctggctgcttttggggcgttgagttggccttccagagggtgcctggggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcagttcggtgctggctgcttttggggcgttgagttggccttccagagggtgcctggggt 487
Query: 183 gaccaagactgaagttggttactcacaggggattttgcataacccaagctatgaggatgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaccaagactgaagttggttactcacaggggattttgcataacccaagctatgaggatgt 547
Query: 243 gtcttcagggaccactaaccacgcagagattgtaagagtccaata 287
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtcttcagggaccactaaccacgcagagattgtaagagtccaata 592
>gnl|LJGI|TC63861 similar to UniRef100_A7PBQ8 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (89%)
Length = 1121
Score = 165 bits (83), Expect = 2e-40
Identities = 227/275 (82%)
Strand = Plus / Plus
Query: 10 atgaacctgttgaacagacttggatttggtagcacaaggtcaccggagaacatggattca 69
||||||||| ||| ||||||||| | ||||| ||||| || ||||| |||||||||
Sbjct: 214 atgaacctgctgagcagacttggtctcagtagcccaagggcaggagagaatatggattca 273
Query: 70 tccattgctcagggaccagatgatgacataccggcaccaggccagcagtttgcgcagttc 129
|||||||||||||||||||| | |||||||||||| | || || |||||||| |||||
Sbjct: 274 tccattgctcagggaccagacaacgacataccggcagccggtcaacagtttgcccagttt 333
Query: 130 ggtgctggctgcttttggggcgttgagttggccttccagagggtgcctggggtgaccaag 189
|||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 334 ggtgctggttgcttctggggtgttgagctggccttccagagggtatctggggtgaccaag 393
Query: 190 actgaagttggttactcacaggggattttgcataacccaagctatgaggatgtgtcttca 249
|| || |||||||| ||||| | |||||||| ||||| ||||||||||| | ||
Sbjct: 394 acagaggttggttatagccagggcctcttgcataatccaagatatgaggatgtctgctct 453
Query: 250 gggaccactaaccacgcagagattgtaagagtcca 284
||||| || |||||| ||||| |||| || |||||
Sbjct: 454 gggactacaaaccactcagaggttgtcagggtcca 488
>gnl|LJGI|BG662434 similar to UniRef100_A7PBQ8 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (49%)
Length = 393
Score = 163 bits (82), Expect = 7e-40
Identities = 193/230 (83%)
Strand = Plus / Plus
Query: 55 gagaacatggattcatccattgctcagggaccagatgatgacataccggcaccaggccag 114
||||| ||||||||||||||||||||||||||||| | |||||||||||| | || ||
Sbjct: 80 gagaatatggattcatccattgctcagggaccagacaacgacataccggcagccggtcaa 139
Query: 115 cagtttgcgcagttcggtgctggctgcttttggggcgttgagttggccttccagagggtg 174
|||||||| ||||| |||||||| ||||| ||||| |||||| ||||||||||||||||
Sbjct: 140 cagtttgcccagtttggtgctggttgcttctggggtgttgagctggccttccagagggta 199
Query: 175 cctggggtgaccaagactgaagttggttactcacaggggattttgcataacccaagctat 234
|||||||||||||||| || |||||||| ||||| | |||||||| ||||| |||
Sbjct: 200 tctggggtgaccaagacagaggttggttatagccagggcctcttgcataatccaagatat 259
Query: 235 gaggatgtgtcttcagggaccactaaccacgcagagattgtaagagtcca 284
|||||||| | || ||||| || |||||| ||||| |||| || |||||
Sbjct: 260 gaggatgtctgctctgggactacaaaccactcagaggttgtcagggtcca 309