Miyakogusa Predicted Gene

Lj0g3v0080589.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0080589.1 Non Chatacterized Hit- tr|C3Y3Q4|C3Y3Q4_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,35.81,3e-18,FAMILY NOT NAMED,NULL; DUF2838,Protein of unknown
function DUF2838,gene.g5954.t1.1
         (630 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS358867 similar to UniRef100_A7PE25 Cluster: Chromosom...   244   6e-64
gnl|LJGI|GO021631 similar to UniRef100_A9RQN1 Cluster: Predicted...   115   3e-25

>gnl|LJGI|FS358867 similar to UniRef100_A7PE25 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 472

 Score =  244 bits (123), Expect = 6e-64
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 508 aggcaggcaattctgaaggagaaaaagaagtcagagacacaaccttctcaaggtcaattg 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggcaggcaattctgaaggagaaaaagaagtcagagacacaaccttctcaaggtcaattg 291

                                                                       
Query: 568 gatcaagcatcaatggtgatggaaaacggtagcaacgatgctgttgggacatctgattcg 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gatcaagcatcaatggtgatggaaaacggtagcaacgatgctgttgggacatctgattcg 231

              
Query: 628 tga 630
           |||
Sbjct: 230 tga 228


>gnl|LJGI|GO021631 similar to UniRef100_A9RQN1 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (11%)
          Length = 106

 Score =  115 bits (58), Expect = 3e-25
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                       
Query: 88  tgctattatgcaaatacaatcttcttggttgatcttctttgttatccaaggaatgaaaag 147
           ||||||||||| ||||||||||||||| || | ||||||| |||||||||||||||||||
Sbjct: 9   tgctattatgccaatacaatcttcttgatttaccttcttttttatccaaggaatgaaaag 68

                                                 
Query: 148 cttttcatggtttgcttttcttttgctgaggggccatt 185
           || ||  |||||||||| || |||||||||||||||||
Sbjct: 69  ctctttttggtttgcttctcatttgctgaggggccatt 106