Miyakogusa Predicted Gene
- Lj0g3v0079829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0079829.1 tr|B9MZK2|B9MZK2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595495 PE=4
SV=1,31.76,5e-19,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT,CUFF.4097.1
(541 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch... 172 1e-42
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 172 1e-42
gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Ch... 163 1e-39
gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Ch... 153 1e-36
gnl|LJGI|BP042107 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 143 1e-33
gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Ch... 137 8e-32
gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chr... 101 4e-21
>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 766
Score = 172 bits (87), Expect = 1e-42
Identities = 264/323 (81%)
Strand = Plus / Plus
Query: 112 ttattcaatcgcttgttacaaatgcgtcataccccttccatcattgaatttaacaagatt 171
|||||||| |||||| | |||| | ||| |||||| |||||||| |||||| ||||||
Sbjct: 166 ttattcaaccgcttgctccaaacgagtcctaccccatccatcatcgaatttggtaagatt 225
Query: 172 cttactcctctcgtgaagacgaagcattactccatcgccatatccctttctcaccaaatg 231
| || | |||||||||| |||||||||| ||| || || ||||||||||||||||||
Sbjct: 226 ttaaccaccctcgtgaagatgaagcattaccccactgctatttccctttctcaccaaatg 285
Query: 232 gaatttaggggaatcatgcctgacatcgttactctcaacatcttaatcaactgttactgc 291
|||| || |||||| || || |||| |||||| | | |||||| ||||| |||||||||
Sbjct: 286 gaatctaagggaattatttctaacattgttactatgagcatcttgatcaattgttactgc 345
Query: 292 cacctaggtcaaatgtctgttgccttttctgttttggccaagattctcaagaggggttat 351
||| |||||||||| || | ||||||||||| | || || ||||||||| |||||||
Sbjct: 346 cacataggtcaaatacctttcgccttttctgtactcgctaaacttctcaagaagggttat 405
Query: 352 aagccaaatacaatcaccttcactaccctcattaaaggtctctgtcttaatgaccaggtt 411
|||| || || ||||||||||||| || || ||||| ||||||||||||| || |||
Sbjct: 406 cagcccaacactgtcaccttcactacacttatcaaaggcctctgtcttaatggtcacgtt 465
Query: 412 aagagagcactgcaatttcatga 434
||||||||||||||||||||||
Sbjct: 466 cagagagcactgcaatttcatga 488
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 172 bits (87), Expect = 1e-42
Identities = 123/135 (91%)
Strand = Plus / Plus
Query: 407 aggttaagagagcactgcaatttcatgacgagctgctagcacaaggaattcaattgaacc 466
||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 11 aggttaagaaagcactgcactttcatgacgacctgctagcgcaaggaattcaattgaacc 70
Query: 467 aagttagctatgggatcttaatcaatgggctgtgtaaagtgggacaaacaagagctgccc 526
|||| || ||||||| ||| ||||||||| |||||||| |||| |||||||||||||||
Sbjct: 71 aagtcagttatgggaccttgatcaatgggttgtgtaaaatgggtgaaacaagagctgccc 130
Query: 527 tgcgattgctgagac 541
|||||||||||||||
Sbjct: 131 tgcgattgctgagac 145
>gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 802
Score = 163 bits (82), Expect = 1e-39
Identities = 246/300 (82%), Gaps = 3/300 (1%)
Strand = Plus / Plus
Query: 141 taccccttccatcattgaatttaacaagattcttactcctctcgtgaagac---gaagca 197
||||||||||||||| ||||| ||||||||| | ||| |||| || ||||| ||||||
Sbjct: 125 taccccttccatcatcgaattcaacaagattttaacttctcttgttaagaccaagaagca 184
Query: 198 ttactccatcgccatatccctttctcaccaaatggaatttaggggaatcatgcctgacat 257
|||| ||| |||||| || |||||||||||||||||| ||| |||||| ||| ||||
Sbjct: 185 ttaccccaccgccatttcactttctcaccaaatggaacttaagggaattgcgccaaacat 244
Query: 258 cgttactctcaacatcttaatcaactgttactgccacctaggtcaaatgtctgttgcctt 317
|||||||||| |||||| ||||| ||||||||| | ||||||| ||| | ||| ||
Sbjct: 245 tgttactctcagcatcttgatcaattgttactgcaatctaggtcgaatcacctctgcatt 304
Query: 318 ttctgttttggccaagattctcaagaggggttataagccaaatacaatcaccttcactac 377
|||||| |||||||| ||||||||||| |||| | |||| |||| ||||||||||||||
Sbjct: 305 ttctgtattggccaacattctcaagagaggttttcagcctgataccatcaccttcactac 364
Query: 378 cctcattaaaggtctctgtcttaatgaccaggttaagagagcactgcaatttcatgacga 437
|| || ||||||||||||||| | | ||||| || |||| || ||||||||||||||
Sbjct: 365 tcttatcaaaggtctctgtcttcgcggcaaggttcagcgagccctccaatttcatgacga 424
>gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 760
Score = 153 bits (77), Expect = 1e-36
Identities = 295/367 (80%), Gaps = 3/367 (0%)
Strand = Plus / Plus
Query: 141 taccccttccatcattgaatttaacaagattcttactcctctcgtgaagac---gaagca 197
||||||||||||| ||||||||||||||||| | ||| | || || ||||| ||||||
Sbjct: 178 taccccttccatcgttgaatttaacaagattttaacttcccttgttaagaccaagaagca 237
Query: 198 ttactccatcgccatatccctttctcaccaaatggaatttaggggaatcatgcctgacat 257
|||||||| ||| || || ||||||||||| ||||| || | ||||||| ||| | |
Sbjct: 238 ttactccaccgctatctcgctttctcaccagatggagttcactggaatcaagccaagcct 297
Query: 258 cgttactctcaacatcttaatcaactgttactgccacctaggtcaaatgtctgttgcctt 317
|||||| | |||||||| ||||| || |||||||||||||||||||| | ||| ||
Sbjct: 298 tgttactatgaacatcttgatcaattgctactgccacctaggtcaaatcaattctgcttt 357
Query: 318 ttctgttttggccaagattctcaagaggggttataagccaaatacaatcaccttcactac 377
|||||| | |||| ||||||||||| |||||| |||| |||| ||||||||||||||
Sbjct: 358 ttctgtactcgccagaattctcaagagtggttatcagcctgataccatcaccttcactac 417
Query: 378 cctcattaaaggtctctgtcttaatgaccaggttaagagagcactgcaatttcatgacga 437
|| || |||||||||||||||| || | ||||| || |||| || ||||||||||||||
Sbjct: 418 tcttatcaaaggtctctgtcttagtggcaaggttcagcgagccctccaatttcatgacga 477
Query: 438 gctgctagcacaaggaattcaattgaaccaagttagctatgggatcttaatcaatgggct 497
|| ||||||| ||| ||| ||| | ||||| || || || | ||| |||||||||||
Sbjct: 478 tgtgatagcacagggatttcggttggatcaagtcagttacggaaccttgatcaatgggct 537
Query: 498 gtgtaaa 504
||||||
Sbjct: 538 atgtaaa 544
>gnl|LJGI|BP042107 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (11%)
Length = 515
Score = 143 bits (72), Expect = 1e-33
Identities = 222/272 (81%)
Strand = Plus / Plus
Query: 130 caaatgcgtcataccccttccatcattgaatttaacaagattcttactcctctcgtgaag 189
||||||| || ||||||||||||||| ||||||| | |||| | ||| | || || |||
Sbjct: 235 caaatgcatcctaccccttccatcatcgaatttagtatgattttaacttccctagtcaag 294
Query: 190 acgaagcattactccatcgccatatccctttctcaccaaatggaatttaggggaatcatg 249
| |||||||||||||| |||||| || |||||||||||||||||| ||| |||||| | |
Sbjct: 295 atgaagcattactccaccgccatttcactttctcaccaaatggaacttaagggaattagg 354
Query: 250 cctgacatcgttactctcaacatcttaatcaactgttactgccacctaggtcaaatgtct 309
|||||||| || ||| || |||||| ||||| |||||||||||| |||||||| | ||
Sbjct: 355 cctgacattgtcacttccagcatcttgatcaattgttactgccacttaggtcaacttact 414
Query: 310 gttgccttttctgttttggccaagattctcaagaggggttataagccaaatacaatcacc 369
|| |||||||| ||| || ||||||||||| |||||| ||||||| || |||| |
Sbjct: 415 tcagctttttctgtaatgggaaacattctcaagagaggttatcagccaaacactatcatc 474
Query: 370 ttcactaccctcattaaaggtctctgtcttaa 401
|| | ||| || || |||||||||||||||||
Sbjct: 475 ttgaatacacttatgaaaggtctctgtcttaa 506
>gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 785
Score = 137 bits (69), Expect = 8e-32
Identities = 219/269 (81%)
Strand = Plus / Plus
Query: 271 atcttaatcaactgttactgccacctaggtcaaatgtctgttgccttttctgttttggcc 330
||||| ||||| |||| |||| || | |||||||| || | ||||| ||||| |||| |
Sbjct: 353 atcttgatcaattgtttctgcaacatgggtcaaatccctttcgccttctctgtattgggc 412
Query: 331 aagattctcaagaggggttataagccaaatacaatcaccttcactaccctcattaaaggt 390
||||||||||||||||||||| ||||| |||| | ||||| ||||| ||||| ||||||
Sbjct: 413 aagattctcaagaggggttatcagccagatactgtaaccttgactacactcatgaaaggt 472
Query: 391 ctctgtcttaatgaccaggttaagagagcactgcaatttcatgacgagctgctagcacaa 450
|||||||||| || ||||| |||| ||| |||||||||||||| | || |||||||
Sbjct: 473 ctctgtcttagtggtcaggtcaagaaagctttgcaatttcatgaccatgtggtagcacat 532
Query: 451 ggaattcaattgaaccaagttagctatgggatcttaatcaatgggctgtgtaaagtggga 510
||| |||| | ||||||||||| ||||||| ||| |||||||| | |||||| | |||
Sbjct: 533 ggatttcagctcaaccaagttagttatgggaccttgatcaatggattatgtaaaattgga 592
Query: 511 caaacaagagctgccctgcgattgctgag 539
||||||| |||||| ||| ||||||||
Sbjct: 593 gaaacaagtgctgccttgcagttgctgag 621
>gnl|LJGI|TC62388 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 833
Score = 101 bits (51), Expect = 4e-21
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 149 ccatcattgaatttaacaagattcttactcctctcgtgaagacgaagcattactccatcg 208
||||||| ||||| ||||||||| | ||| | |||||||||| |||||||||||||| |
Sbjct: 482 ccatcatcgaattcaacaagattttaacttccctcgtgaagatgaagcattactccactg 541
Query: 209 ccatatccctttctcaccaaatggaatttaggggaatcatgcctgacatcgttactctca 268
||||||||||||||| |||||| || | | ||| || |||||| || | || ||| ||
Sbjct: 542 tcatatccctttctcatcaaatgcaactcaaggggattatgcctaactttgtcacttcca 601
Query: 269 acatcttaatcaactgttactgccacctaggtcaaatgtctgttgccttttctgttttgg 328
||||||| ||| | ||||||||||| ||||||||||| | | || |||||||| || |
Sbjct: 602 acatcttgatcgattgttactgccatctaggtcaaatcaatttcgctttttctgtatttg 661
Query: 329 ccaagattctcaagaggggttat 351
||| |||| |||||||||||||
Sbjct: 662 ccactattcgcaagaggggttat 684