Miyakogusa Predicted Gene

Lj0g3v0078139.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0078139.1 Non Chatacterized Hit- tr|A9NUN8|A9NUN8_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,57.61,3e-19,RRM_1,RNA recognition motif domain; RRM,RNA recognition
motif domain; RNA-binding domain, RBD,NULL;
,NODE_61310_length_304_cov_174.796051.path1.1
         (289 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome...    56   1e-07

>gnl|LJGI|TC58641 similar to UniRef100_A7R1X0 Cluster: Chromosome undetermined
           scaffold_383, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_383,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (58%)
          Length = 2146

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 112/140 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatgaccacaacacccagagaccaagaggttttggcttcatcacttatgattcagaa 60
           ||||||||||| ||||| || || || ||||||||||| ||||| || | |||||| || 
Sbjct: 544 atgtatgaccataacacacaaaggcctagaggttttggattcataacctttgattctgag 603

                                                                       
Query: 61  gaagctgtagacagagttctttttaagacatttcatgaactcaacggaaagatggttgag 120
           ||||  || || | |||||| |  || || ||||||||||| || || || |||||||||
Sbjct: 604 gaaggagttgagaaagttctgtacaaaacttttcatgaactgaatggtaaaatggttgag 663

                               
Query: 121 gtcaagcgagcagttcccaa 140
           || ||| |||| ||||||||
Sbjct: 664 gttaagagagctgttcccaa 683