Miyakogusa Predicted Gene
- Lj0g3v0077969.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0077969.1 tr|G7IKN3|G7IKN3_MEDTR LOB domain protein
OS=Medicago truncatula GN=MTR_2g093310 PE=4 SV=1,76.35,0,FAMILY NOT
NAMED,NULL; LOB,Lateral organ boundaries, LOB; coiled-coil,NULL;
seg,NULL; DUF260,Lateral,CUFF.3965.1
(576 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62400 similar to UniRef100_A7NZE1 Cluster: Chromosome... 167 9e-41
gnl|LJGI|TC72156 homologue to UniRef100_Q9SHE9 Cluster: LOB doma... 56 2e-07
gnl|LJGI|FS328199 similar to UniRef100_Q9SHE9 Cluster: LOB domai... 52 4e-06
>gnl|LJGI|TC62400 similar to UniRef100_A7NZE1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (69%)
Length = 941
Score = 167 bits (84), Expect = 9e-41
Identities = 225/272 (82%)
Strand = Plus / Plus
Query: 141 caagttcaccattgctcatcgagtctttggtgctagcaacattatcaagttcttacagga 200
||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 360 caagttcaccattgctcatagagtctttggagctagcaacatcatcaagttcttgcagga 419
Query: 201 acttccagagtctcaaagagcagatgcagtgaccagcatggtttatgaggctggtgcaag 260
| ||||| || || ||||||||||| |||| |||||||| ||||| || ||| ||
Sbjct: 420 gttaccagaatcccagagagcagatgctgtgagtagcatggtgtatgaagcaaatgctag 479
Query: 261 aataagagaccctgtgtatggatgtgcaggtgcaatttgccagctccaaaagcaagtgaa 320
|| |||||||| || ||||| |||||||||||||| ||||| || ||||||||||| |
Sbjct: 480 gatcagagacccagtttatggctgtgcaggtgcaatatgccaacttcaaaagcaagttag 539
Query: 321 tgagcttcaagcacaattagctaaagcacatgctgagcttgtaaacatgcaactccaaca 380
|||||| ||||||||| |||| ||||| || ||||| | || |||||||| ||||||
Sbjct: 540 tgagctgcaagcacaactagccaaagctcaagctgaaatggttaacatgcagtgccaaca 599
Query: 381 agccaatcttatggctctaatttgcatggaaa 412
|| ||||| | || ||||||||||||||||
Sbjct: 600 tgctaatctactagcactaatttgcatggaaa 631
>gnl|LJGI|TC72156 homologue to UniRef100_Q9SHE9 Cluster: LOB domain-containing
protein 4; n=1; Arabidopsis thaliana|Rep: LOB
domain-containing protein 4 - Arabidopsis thaliana
(Mouse-ear cress), partial (67%)
Length = 945
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 223 gatgcagtgaccagcatggtttatgaggctggtgcaagaataagagaccctgtgtatgga 282
||||| |||| ||||||||| |||||||| ||||||| | || ||||||||||||||
Sbjct: 255 gatgctgtgagcagcatggtgtatgaggcaaatgcaagagtgagggaccctgtgtatggc 314
Query: 283 tgtgcaggtgcaattt 298
|||| |||||| ||||
Sbjct: 315 tgtgtaggtgccattt 330
>gnl|LJGI|FS328199 similar to UniRef100_Q9SHE9 Cluster: LOB domain-containing protein
4; n=1; Arabidopsis thaliana|Rep: LOB domain-containing
protein 4 - Arabidopsis thaliana (Mouse-ear cress),
partial (38%)
Length = 699
Score = 52.0 bits (26), Expect = 4e-06
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 229 gtgaccagcatggtttatgaggctggtgcaagaataagagaccctgtgtatggatgtgca 288
|||| ||||||||| |||||||| ||||||| | || |||||||||||||| |||| |
Sbjct: 344 gtgagcagcatggtgtatgaggcaaatgcaagagtgagggaccctgtgtatggctgtgta 285
Query: 289 ggtgcaattt 298
||||| ||||
Sbjct: 284 ggtgccattt 275