Miyakogusa Predicted Gene
- Lj0g3v0077829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0077829.1 Non Chatacterized Hit- tr|I1PIK2|I1PIK2_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,41.55,3e-18,PREDICTED PROTEIN (FRAGMENT),NULL; MEMBRANE
ASSOCIATED RING FINGER,NULL; seg,NULL,CUFF.3954.1
(858 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77059 similar to UniRef100_Q9ASR2 Cluster: AT5g60580/... 80 3e-14
gnl|LJGI|TC64680 similar to UniRef100_A7PT25 Cluster: Chromosome... 80 3e-14
gnl|LJGI|FS332635 similar to UniRef100_A7PT25 Cluster: Chromosom... 76 4e-13
>gnl|LJGI|TC77059 similar to UniRef100_Q9ASR2 Cluster: AT5g60580/muf9_230; n=1;
Arabidopsis thaliana|Rep: AT5g60580/muf9_230 -
Arabidopsis thaliana (Mouse-ear cress), partial (10%)
Length = 798
Score = 79.8 bits (40), Expect = 3e-14
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 447 aatctcaagaacagtgtccctgactaagatttttactcctaagattaatagaacctcatc 506
|||||||||| || ||||||| | |||||| |||||||||| |||||| ||||| || ||
Sbjct: 665 aatctcaagatcattgtcccttagtaagatatttactcctaggattaagagaacatcgtc 724
Query: 507 attaccggtggaagaaattggccgcgcaaacacagaatctgctc 550
|||||||| ||||||||||| | ||||| ||||||||||||
Sbjct: 725 gttaccggtagaagaaattggacattcaaacgcagaatctgctc 768
Score = 75.8 bits (38), Expect = 4e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 205 acccctactcataagagagtgaattttcttgtgacttctcgctcggttgatgctccaa 262
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||
Sbjct: 450 acccctactcctaagagagtgaatttccttgtgtcttctcgctctgttgatactccaa 507
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 289 cctgggaattcagcatcaagaggcaaatcatccataagaagc 330
||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 519 cctgggaattcagcatcaaaaggaagatcatccataagaagc 560
>gnl|LJGI|TC64680 similar to UniRef100_A7PT25 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 1291
Score = 79.8 bits (40), Expect = 3e-14
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 807 tgaaggaggggagacgttcaagatggaatgcagctgcaaaggtgaacttgct 858
||||||||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 6 tgaaggaggtgagaccttcaagttggaatgcagctgcaaaggtgaacttgct 57
>gnl|LJGI|FS332635 similar to UniRef100_A7PT25 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 674
Score = 75.8 bits (38), Expect = 4e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 205 acccctactcataagagagtgaattttcttgtgacttctcgctcggttgatgctccaa 262
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||
Sbjct: 472 acccctactcctaagagagtgaatttccttgtgtcttctcgctctgttgatactccaa 529
Score = 61.9 bits (31), Expect = 6e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 289 cctgggaattcagcatcaagaggcaaatcatccataagaagcatgttgccaaaattgaac 348
||||||||||||||||||| ||| | |||||||||||||||| | | |||||||||| |
Sbjct: 541 cctgggaattcagcatcaaaaggaagatcatccataagaagcctcctaccaaaattgagc 600
Query: 349 ttc 351
|||
Sbjct: 601 ttc 603