Miyakogusa Predicted Gene

Lj0g3v0075799.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0075799.3 Non Chatacterized Hit- tr|H2Y878|H2Y878_CIOSA
Uncharacterized protein (Fragment) OS=Ciona savignyi
P,42.86,4.3,seg,NULL,CUFF.3815.3
         (444 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67964 similar to UniRef100_Q66GJ0 Cluster: At1g31410;...   559   e-159

>gnl|LJGI|TC67964 similar to UniRef100_Q66GJ0 Cluster: At1g31410; n=1; Arabidopsis
           thaliana|Rep: At1g31410 - Arabidopsis thaliana
           (Mouse-ear cress), partial (11%)
          Length = 801

 Score =  559 bits (282), Expect = e-159
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctatcccgctacaaacacatcaccctccttctctaccttcaccgcgttacccttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23  atggctatcccgctacaaacacatcaccctccttctctaccttcaccgcgttacccttat 82

                                                                       
Query: 61  ctcttccaaaaccataaccctaaccctaaccctctccattccttccttataatccccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ctcttccaaaaccataaccctaaccctaaccctctccattccttccttataatccccacc 142

                                                                       
Query: 121 aaatccccattgcgattctccgggcaccggaatttcacacaccgctcgccggcgtcgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aaatccccattgcgattctccgggcaccggaatttcacacaccgctcgccggcgtcgctc 202

                                                                       
Query: 181 accgcagctgcacgccgggaaccttcagaaacgacgccgctcaagttacctcaggctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 accgcagctgcacgccgggaaccttcagaaacgacgccgctcaagttacctcaggctctc 262

                                                     
Query: 241 gtgcgactcgccgtctccgccgcgctgtttctctgcctcggc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgcgactcgccgtctccgccgcgctgtttctctgcctcggc 304



 Score =  321 bits (162), Expect = 2e-87
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 283 cggttcagcaggagcagcaaactgttcaagacgatcaaggtggaagtgaacataatgacg 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cggttcagcaggagcagcaaactgttcaagacgatcaaggtggaagtgaacataatgacg 404

                                                                       
Query: 343 aagaaatggtcgcagatgatcaaggtggaagtgagcataaggataacgaaatggttgcag 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagaaatggtcgcagatgatcaaggtggaagtgagcataaggataacgaaatggttgcag 464

                                                     
Query: 403 atgatcaaggtggaagtgaacataatgacaaagaaaatgtag 444
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atgatcaaggtggaagtgaacataatgacaaagaaaatgtag 506