Miyakogusa Predicted Gene

Lj0g3v0072149.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0072149.1 tr|I4WXH2|I4WXH2_9GAMM SsrA-binding protein
OS=Rhodanobacter sp. 116-2 GN=smpB PE=3 SV=1,32.14,1.7, ,CUFF.3554.1
         (222 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW602491 weakly similar to UniRef100_A8J788 Cluster: Hy...   248   1e-65
gnl|LJGI|BP073014 UniRef100_A0R9J3 Cluster: Glycine betaine tran...   145   1e-34

>gnl|LJGI|BW602491 weakly similar to UniRef100_A8J788 Cluster: Hydroxyproline-rich
           glycoprotein, stress-induced; n=1; Chlamydomonas
           reinhardtii|Rep: Hydroxyproline-rich glycoprotein,
           stress-induced - Chlamydomonas reinhardtii, partial (7%)
          Length = 465

 Score =  248 bits (125), Expect = 1e-65
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtggagcagccatgggagaggaagggagtggcggttgtggttcccacagtcctgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atggtggagcagccatgggagaggaagggagtggcggttgtggttcccacagtcctgaca 400

                                                                       
Query: 61  acccatcactcctcctcggctcctcctgcaaaggccccaaccttaacgctgcaacggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acccatcactcctcctcggctcctcctgcaaaggccccaaccttaacgctgcaacggagg 460

                
Query: 121 agtat 125
           |||||
Sbjct: 461 agtat 465


>gnl|LJGI|BP073014 UniRef100_A0R9J3 Cluster: Glycine betaine transporter; n=1;
           Bacillus thuringiensis str. Al Hakam|Rep: Glycine,
           partial (2%)
          Length = 395

 Score =  145 bits (73), Expect = 1e-34
 Identities = 86/89 (96%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                       
Query: 133 cttgccggaagctcctcaccgaagccacgatgtctactgcctcacgcaagcttctggaaa 192
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cttgcaggaagctcctcaccgaagccacgatgtctactgcctcacgcaagcttctggaaa 285

                                        
Query: 193 atgaacctgagaacaatcaa-gcttgatt 220
           ||||||||||| |||||||| ||||||||
Sbjct: 284 atgaacctgagcacaatcaacgcttgatt 256