Miyakogusa Predicted Gene
- Lj0g3v0071619.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0071619.1 tr|Q5NA81|Q5NA81_ORYSJ Os01g0242200 protein
OS=Oryza sativa subsp. japonica GN=B1066G12.13 PE=4
SV=1,32.32,0.00000008,ZINC_FINGER_C2H2_2,Zinc finger, C2H2; SUBFAMILY
NOT NAMED,NULL; SERINE/THREONINE-PROTEIN KINASE RIO,,CUFF.3512.1
(1449 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 153 4e-36
gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromos... 119 5e-26
gnl|LJGI|TC61694 109 5e-23
gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromoso... 94 3e-18
gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc fi... 86 7e-16
gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromoso... 74 3e-12
gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosom... 60 4e-08
gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc fing... 58 2e-07
>gnl|LJGI|TC78698 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (65%)
Length = 781
Score = 153 bits (77), Expect = 4e-36
Identities = 299/373 (80%)
Strand = Plus / Plus
Query: 190 aagggctttcaaagggatcagaatcttcagctccatcgacgcggacacaaccttccatgg 249
||||| ||||| ||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct: 233 aaggggtttcagagggatcagaatcttcagctccatcgacgggggcacaatctgccatgg 292
Query: 250 aagctcaagcaaaggacaaacaaagaaccgaggaagagagtttatgtgtgtccagagaag 309
||||| | ||| ||| ||| ||| || ||||||||| || ||||| ||||| || |
Sbjct: 293 aagctgaggcagaggtcaagcaaggaggtgaggaagagggtgtatgtttgtcctgaaccg 352
Query: 310 agttgtgtccaccatgatccttcaagggctcttggagacttaactgggatcaaaaagcac 369
| |||| || || |||||||| || ||| | || || | || ||||| || |||||
Sbjct: 353 acgtgtgctcatcacgatccttctagagctttgggtgatctcacggggattaagaagcat 412
Query: 370 ttttgcagaaagcatggagaaaagaagtggaagtgcgacaagtgctcaaagcgttatgct 429
|| |||||||| ||||| || ||||||||||| || ||||||||||| ||| |||||
Sbjct: 413 ttctgcagaaaacatggcgagaagaagtggaaatgtgacaagtgctctaagaaatatgcg 472
Query: 430 gtgcagtctgattggaaagcccactcaaaaacctgtggcaccagagaatacaagtgtgat 489
|| || || ||||||||||| ||||| || | || || |||||||| || || || |||
Sbjct: 473 gttcaatcggattggaaagctcactccaagatttgcggtaccagagagtataaatgcgat 532
Query: 490 tgtggaactatcttttcaaggagggatagcttcatcacccacagggccttctgtgatgct 549
||||||||| | |||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct: 533 tgtggaactttgttttcaaggagggatagcttcatcacgcatagggcgttttgtgatgcg 592
Query: 550 ttggcagaagaaa 562
|| ||||| ||||
Sbjct: 593 ttagcagaggaaa 605
>gnl|LJGI|DC593437 homologue to UniRef100_A7NZH2 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 589
Score = 119 bits (60), Expect = 5e-26
Identities = 233/290 (80%), Gaps = 3/290 (1%)
Strand = Plus / Plus
Query: 208 cagaatcttcagctccatcgacgcggacacaaccttccatggaagctcaagcaaaggaca 267
||||| || ||||| ||||| || ||||||||||| || |||||||| ||||||||| |
Sbjct: 191 cagaacctgcagctgcatcggcgaggacacaacctgccttggaagctgaagcaaagggcc 250
Query: 268 aacaaagaacc---gaggaagagagtttatgtgtgtccagagaagagttgtgtccaccat 324
|||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 251 aacaaagatcaagtgaggaagaaggtttacgtgtgcccagagaagagttgtgtccaccac 310
Query: 325 gatccttcaagggctcttggagacttaactgggatcaaaaagcacttttgcagaaagcat 384
|| ||| || || ||||||||||| || || ||||| || ||||| ||||||| |||
Sbjct: 311 gaccctagtagagcacttggagacttgacaggaatcaagaaacacttcagcagaaaacat 370
Query: 385 ggagaaaagaagtggaagtgcgacaagtgctcaaagcgttatgctgtgcagtctgattgg 444
|| || |||||||||||||| || |||||||| ||| || ||||| || || ||||||
Sbjct: 371 ggtgagaagaagtggaagtgtgagaagtgctccaagaaatacgctgttcattccgattgg 430
Query: 445 aaagcccactcaaaaacctgtggcaccagagaatacaagtgtgattgtgg 494
|| ||||| | || | ||||| || ||||| ||||||||||| |||||
Sbjct: 431 aaggcccatgccaagatttgtgggactagagagtacaagtgtgactgtgg 480
>gnl|LJGI|TC61694
Length = 795
Score = 109 bits (55), Expect = 5e-23
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 1091 catcagcaaacatgtcagccacagctttgttgcagaaagctgcacagattggagcaacct 1150
||||||| |||||||| ||||||||||||||||| |||||||| || |||||| |||| |
Sbjct: 387 catcagctaacatgtctgccacagctttgttgcaaaaagctgctcaaattggaacaactt 446
Query: 1151 caacaactgacccatcattccttgggagcttaggtttga 1189
| ||||||| ||||||||||||||||||||||| ||||
Sbjct: 447 cctcaactgatccatcattccttgggagcttaggattga 485
Score = 52.0 bits (26), Expect = 1e-05
Identities = 105/130 (80%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 1321 caaatgcaccctgccaaacgcagacatgttcagagtgaagagggtggaggggggcaaact 1380
||||||| |||||| ||||| | ||||| || || |||||| ||| |||| ||||||
Sbjct: 611 caaatgccccctgcgaaacgacgccatgtgcaaagcgaagagagtgcttggggacaaact 670
Query: 1381 agggattttcttggggttggtgt-gcaaaccctttaccacccttcaacaatcaatgggtg 1439
|||||||||||||| ||||| || || |||| ||| || || ||| ||||||| || ||
Sbjct: 671 agggattttcttggtgttggagtggcgaaccatttgccgccactcatcaatcaacggatg 730
Query: 1440 gatttgattt 1449
||||||||||
Sbjct: 731 gatttgattt 740
>gnl|LJGI|TC72355 homologue to UniRef100_A7PS38 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (35%)
Length = 1231
Score = 93.7 bits (47), Expect = 3e-18
Identities = 146/179 (81%)
Strand = Plus / Plus
Query: 364 aagcacttttgcagaaagcatggagaaaagaagtggaagtgcgacaagtgctcaaagcgt 423
|||||||| ||||||||||| || || || || ||||| || ||||||||||| |||
Sbjct: 724 aagcacttctgcagaaagcacggcgagaaaaaatggaaatgtgacaagtgctccaagaag 783
Query: 424 tatgctgtgcagtctgattggaaagcccactcaaaaacctgtggcaccagagaatacaag 483
|| ||||| || ||||| |||| ||| ||||| |||| |||||||| | ||||| |||
Sbjct: 784 tacgctgttcaatctgactggagagcacactccaaaatatgtggcacgaaggaatataag 843
Query: 484 tgtgattgtggaactatcttttcaaggagggatagcttcatcacccacagggccttctg 542
||||| |||||||| |||||||| || || ||||| |||||||||||||| || |||||
Sbjct: 844 tgtgactgtggaaccatcttttccagaagagatagtttcatcacccacagagctttctg 902
>gnl|LJGI|DC594840 homologue to UniRef100_Q2HVE6 Cluster: Zinc finger, C2H2-type; n=1;
Medicago truncatula|Rep: Zinc finger, C2H2-type -
Medicago truncatula (Barrel medic), partial (16%)
Length = 418
Score = 85.7 bits (43), Expect = 7e-16
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 365 agcacttttgcagaaagcatggagaaaagaagtggaagtgcgacaagtgctcaaagcgtt 424
||||||||| |||||||||||| || ||||||||||| || || |||||||| ||| |
Sbjct: 1 agcacttttccagaaagcatggtgagaagaagtggaaatgtgaaaagtgctccaagaagt 60
Query: 425 atgctgtgcagtctgattggaaagcccactcaaaaacctgtggcaccagagaatacaagt 484
|||| || || || || |||||||| ||||| ||||||||||| || |||||||||| |
Sbjct: 61 atgcagttcaatcagactggaaagctcactccaaaacctgtggtacaagagaatacagat 120
Query: 485 gtgattgtgga 495
|||| ||||||
Sbjct: 121 gtgactgtgga 131
>gnl|LJGI|TC60668 homologue to UniRef100_A7PUY6 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 951
Score = 73.8 bits (37), Expect = 3e-12
Identities = 157/197 (79%)
Strand = Plus / Plus
Query: 361 aaaaagcacttttgcagaaagcatggagaaaagaagtggaagtgcgacaagtgctcaaag 420
||||||||||| ||||||||||| || || ||||||||||| ||||| || ||||| |||
Sbjct: 467 aaaaagcacttctgcagaaagcacggtgagaagaagtggaaatgcgagaaatgctccaag 526
Query: 421 cgttatgctgtgcagtctgattggaaagcccactcaaaaacctgtggcaccagagaatac 480
||||| || || |||||||||||||| ||||| || || || |||||||| ||
Sbjct: 527 aaatatgcagttcaatctgattggaaagctcactccaaggtttgcggtaccagagagtat 586
Query: 481 aagtgtgattgtggaactatcttttcaaggagggatagcttcatcacccacagggccttc 540
|| ||||| || || || | ||||| ||||||||||||||||| || || || || ||
Sbjct: 587 aaatgtgactgcggcacggtgttttcgaggagggatagcttcattactcatagagctttt 646
Query: 541 tgtgatgctttggcaga 557
|| ||||| ||||||||
Sbjct: 647 tgcgatgcgttggcaga 663
>gnl|LJGI|GO019772 similar to UniRef100_A7QBW4 Cluster: Chromosome chr1 scaffold_75,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_75, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 618
Score = 60.0 bits (30), Expect = 4e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 471 cagagaatacaagtgtgattgtggaactatcttttcaaggagggatagcttcatcaccca 530
||||||||| | ||||||||||| || |||| |||||| | ||||| |||||||| ||
Sbjct: 286 cagagaatatagatgtgattgtggcaccctcttctcaaggcgtgatagtttcatcactca 345
Query: 531 cagggccttctgtgatgc 548
|||||||||||||||||
Sbjct: 346 tagggccttctgtgatgc 363
>gnl|LJGI|AV772572 similar to UniRef100_Q10QG1 Cluster: Zinc finger, C2H2 type family
protein, expressed; n=1; Oryza sativa Japonica
Group|Rep: Zinc finger, C2H2 type family protein,
expressed - Oryza sativa subsp. japonica (Rice), partial
(23%)
Length = 491
Score = 58.0 bits (29), Expect = 2e-07
Identities = 110/137 (80%)
Strand = Plus / Minus
Query: 358 atcaaaaagcacttttgcagaaagcatggagaaaagaagtggaagtgcgacaagtgctca 417
||||| |||||||| |||||||||| || || |||||||||||||| || ||||||||
Sbjct: 261 atcaagaagcacttcagcagaaagcacggtgagaagaagtggaagtgtgagaagtgctcc 202
Query: 418 aagcgttatgctgtgcagtctgattggaaagcccactcaaaaacctgtggcaccagagaa 477
||| || || || | || ||||||||||| ||| | |||| || |||||||| ||
Sbjct: 201 aagaaatacgcagtcccatcagattggaaagctcacacccaaacatgcggcaccagggag 142
Query: 478 tacaagtgtgattgtgg 494
||||||||||| |||||
Sbjct: 141 tacaagtgtgactgtgg 125