Miyakogusa Predicted Gene
- Lj0g3v0071519.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0071519.2 tr|G7JPX2|G7JPX2_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_4g107820 PE=4
SV=1,30.36,1e-18,FBOX,F-box domain, cyclin-like; A Receptor for
Ubiquitination Targets,F-box domain, cyclin-like; no ,CUFF.3518.2
(1302 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS325267 347 1e-94
gnl|LJGI|FS341314 similar to UniRef100_A7Q9Q0 Cluster: Chromosom... 176 2e-43
gnl|LJGI|TC74845 weakly similar to UniRef100_Q70WR3 Cluster: S l... 74 2e-12
gnl|LJGI|TC71962 weakly similar to UniRef100_A7PQW0 Cluster: Chr... 64 2e-09
gnl|LJGI|TC78685 similar to UniRef100_A7Q9Q0 Cluster: Chromosome... 62 9e-09
gnl|LJGI|FS360471 UniRef100_Q22HI8 Cluster: Cyclic nucleotide-bi... 56 6e-07
gnl|LJGI|TC77017 similar to UniRef100_Q2HV76 Cluster: F-box prot... 54 2e-06
gnl|LJGI|TC79193 weakly similar to UniRef100_Q2HV76 Cluster: F-b... 52 9e-06
>gnl|LJGI|FS325267
Length = 643
Score = 347 bits (175), Expect = 1e-94
Identities = 388/459 (84%), Gaps = 15/459 (3%)
Strand = Plus / Plus
Query: 30 atctgctgctgaatcaagcaacgtggagaacaagaaggagaagaagaacctcactctacc 89
|||| |||||||| |||||||||||| |||||||||||||||||| |||| ||| ||
Sbjct: 125 atctactgctgaaccaagcaacgtggggaacaagaaggagaagaaa---ctcagtcttcc 181
Query: 90 taccgagttgatcgatgaaattctgcttcggttaccggtgagatctctactgcgctttag 149
|||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct: 182 ccatgagttgatcgttgaaattctgcttcggctaccggtgagatctctactacgctttcg 241
Query: 150 aagggtttgtaagtcatggttctctctcatt---tccgatccccagtttgcaaaatccca 206
|||||||||||||||||||| |||||||||| |||||| |||| || |||||||||||
Sbjct: 242 aagggtttgtaagtcatggtcctctctcattatttccgatacccatttcgcaaaatccca 301
Query: 207 tttcgacttaaatgctgcacccactgatcgtcttcttcttggatttcttgataaggatag 266
||| ||| | |||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 302 ttttgacctgaatgctgcacccactgatcgtcttcttcttcgatttctcgatgaggatag 361
Query: 267 agagagagttgaatcctttgatctagcttcatcacttcacgaccgttccactctcaaagc 326
| |||||| |||||||||||||||||||||||||||| |||||||| ||| ||||| |
Sbjct: 362 cggtagagttcaatcctttgatctagcttcatcacttcatgaccgttcaactgtcaaaac 421
Query: 327 cctctatgtcccacctccatcggatttctcgattccttgtagacacaaccctttgttttt 386
|||| ||||||||||||| || || |||| ||||||||||||| |||
Sbjct: 422 cctcagtgtcccacctcca---------tccatgttgtgtaatcacaaccctttgtattt 472
Query: 387 cttcggttcttgcaggggttttctgcttttagcctatgagagtactggtgatatcattgt 446
||| ||||| |||||||| ||| |||||||||||||| || | | ||||||||||||
Sbjct: 473 cttaggttcatgcagggggtttatgcttttagcctatcagcaaagcgatgatatcattgt 532
Query: 447 gtggaatccaacaaccggtttccataaagaaattccaga 485
||||||||||||||||||||||||| || || |||||||
Sbjct: 533 gtggaatccaacaaccggtttccatcaacaacttccaga 571
>gnl|LJGI|FS341314 similar to UniRef100_A7Q9Q0 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 681
Score = 176 bits (89), Expect = 2e-43
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 106 gaaattctgcttcggttaccggtgagatctctactgcgctttagaagggtttgtaagtca 165
||||||||||||||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 69 gaaattctgcttcggttaccggtgagatctctactgcgcttcaaatgcgtttgtaaatca 128
Query: 166 tggttctctctcatttccgatccccagtttgcaaaatcccatttcgacttaaatgctgca 225
||||| | ||||||||| |||||||| ||||| ||||||||||| ||| |||||||||||
Sbjct: 129 tggttttatctcatttctgatccccaatttgctaaatcccattttgacctaaatgctgca 188
Query: 226 cccactgatcgtcttcttctt 246
|||||| ||||||||||||||
Sbjct: 189 cccactcatcgtcttcttctt 209
Score = 63.9 bits (32), Expect = 2e-09
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 562 agacgtggggtgtttttgaatggctctcttcattggctggtcatttataaggatacaaag 621
|||| ||||||||| ||||| |||||||||||||||||| |||| ||||| |||||
Sbjct: 591 agacatggggtgttcttgaacaactctcttcattggctggttatttctaaggttacaagt 650
Query: 622 cttcctgtagttattgcctttgat 645
|||| ||||||||||||| ||||
Sbjct: 651 cttcaagtagttattgcctatgat 674
Score = 52.0 bits (26), Expect = 9e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 384 tttcttcggttcttgcaggggttttctgcttttagcctatga 425
|||||| |||||||||||||| ||| ||||||||||| ||||
Sbjct: 308 tttcttgggttcttgcagggggtttatgcttttagccaatga 349
>gnl|LJGI|TC74845 weakly similar to UniRef100_Q70WR3 Cluster: S locus F-box (SLF)-S1E
protein; n=1; Antirrhinum hispanicum|Rep: S locus F-box
(SLF)-S1E protein - Antirrhinum hispanicum (Snapdragon),
partial (5%)
Length = 888
Score = 73.8 bits (37), Expect = 2e-12
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 780 tgagatatgggtcatgaaagaatataaagtgcaatcttcttggaccaaggcttttgttat 839
||||||||||||||||||||| ||||||| ||| ||||||||||| || ||||||||||
Sbjct: 223 tgagatatgggtcatgaaagagtataaagggcagtcttcttggactaaatcttttgttat 282
Query: 840 c 840
|
Sbjct: 283 c 283
>gnl|LJGI|TC71962 weakly similar to UniRef100_A7PQW0 Cluster: Chromosome chr6
scaffold_25, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_25, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (49%)
Length = 1206
Score = 63.9 bits (32), Expect = 2e-09
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1206 agatgagtatgcaactgaagatgaggaagaggaagcaactgaagatga 1253
||||||| | |||||||||||||||||||||||| ||||||| |||||
Sbjct: 708 agatgaggaagcaactgaagatgaggaagaggaatcaactgaggatga 661
>gnl|LJGI|TC78685 similar to UniRef100_A7Q9Q0 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 506
Score = 61.9 bits (31), Expect = 9e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 107 aaattctgcttcggttaccggtgagatctct 137
|||||||||||||||||||||||||||||||
Sbjct: 71 aaattctgcttcggttaccggtgagatctct 101
>gnl|LJGI|FS360471 UniRef100_Q22HI8 Cluster: Cyclic nucleotide-binding domain
containing protein; n=1; Tetrahymena thermophila SB210|,
partial (0%)
Length = 660
Score = 56.0 bits (28), Expect = 6e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 777 ggctgagatatgggtcatgaaagaatataaagtgcaatcttcttggac 824
||||||||| ||| | |||||| ||||||||||||| |||||||||||
Sbjct: 484 ggctgagatttggatgatgaaaaaatataaagtgcagtcttcttggac 437
>gnl|LJGI|TC77017 similar to UniRef100_Q2HV76 Cluster: F-box protein interaction
domain; Galactose oxidase, central; n=1; Medicago
truncatula|Rep: F-box protein interaction domain;
Galactose oxidase, central - Medicago truncatula (Barrel
medic), partial (8%)
Length = 1280
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 163 tcatggttctctctcatttccgatccccagtttgcaaaatcccattt 209
||||||||||||| |||||| ||||||| ||||| |||||||||||
Sbjct: 174 tcatggttctctcaaatttccaatccccaatttgccaaatcccattt 220
>gnl|LJGI|TC79193 weakly similar to UniRef100_Q2HV76 Cluster: F-box protein
interaction domain; Galactose oxidase, central; n=1;
Medicago truncatula|Rep: F-box protein interaction
domain; Galactose oxidase, central - Medicago truncatula
(Barrel medic), partial (13%)
Length = 703
Score = 52.0 bits (26), Expect = 9e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 777 ggctgagatatgggtcatgaaagaatataaagtgcaatcttcttgg 822
||||||||||||| | |||||||| ||||||||||| || ||||||
Sbjct: 658 ggctgagatatggatgatgaaagagtataaagtgcactcgtcttgg 703