Miyakogusa Predicted Gene
- Lj0g3v0071409.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0071409.1 tr|A7FGY6|A7FGY6_YERP3 Crispr-associated helicase
Cas3, yersinia-type OS=Yersinia
pseudotuberculosis,32.98,3.1,seg,NULL,CUFF.3497.1
(723 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW623433 638 0.0
gnl|LJGI|TC77885 250 1e-65
gnl|LJGI|TC75314 similar to UniRef100_Q0DEL4 Cluster: Os06g01465... 151 7e-36
gnl|LJGI|TC74357 similar to UniRef100_Q6CA16 Cluster: Similarity... 151 7e-36
gnl|LJGI|TC59377 similar to UniRef100_Q9SET1 Cluster: Cell wall-... 151 7e-36
>gnl|LJGI|BW623433
Length = 473
Score = 638 bits (322), Expect = 0.0
Identities = 325/326 (99%)
Strand = Plus / Plus
Query: 159 ccttgcagcagccacacccatttattcttcctcatcaccaatactctttctcccttcatg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ccttgcagcagccacacccatttattcttcctcatcaccaatactctttctcccttcatg 207
Query: 219 tgacaataaccaccatgctaatttcttatcctcacattccagcacccaaaacgcacataa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgacaataaccaccatgctaatttcttatcctcacattccagcacccaaaacgcacataa 267
Query: 279 tggcccctctttctccttcacgcaacaacaccaactccttctccttagttcattttcttt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggcccctctttctccttcacgcaacaacaccaactccttctccttagttcattttcttt 327
Query: 339 gttgcagcacccacaccaccatggacaaagaccagccacacccggtccatttttcttctc 398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 328 gttgcagcacccacaccaccatggacaaagaccagccacacccgctccatttttcttctc 387
Query: 399 caaccacggcttccttcgtggtactcacaaccagccaccacaaccattcctccttgtttc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caaccacggcttccttcgtggtactcacaaccagccaccacaaccattcctccttgtttc 447
Query: 459 catggccgcaccacactcacgcatca 484
||||||||||||||||||||||||||
Sbjct: 448 catggccgcaccacactcacgcatca 473
Score = 167 bits (84), Expect = 1e-40
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 25 acttcttcttctattattctccaaaagttgcagcacacacacctttccattctctctact 84
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 14 acttcttcttctattattctccaaaagttgccgtacacacacctttccattctctctact 73
Query: 85 tcctccaacgtgagttacatcaccagaccatg 116
||||||||||||||||||||||||||||||||
Sbjct: 74 tcctccaacgtgagttacatcaccagaccatg 105
>gnl|LJGI|TC77885
Length = 974
Score = 250 bits (126), Expect = 1e-65
Identities = 132/134 (98%)
Strand = Plus / Plus
Query: 216 atgtgacaataaccaccatgctaatttcttatcctcacattccagcacccaaaacgcaca 275
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2 atgtgacaataaccaccatgctaatttcttctcctcacattccagcacccaaaacgcaca 61
Query: 276 taatggcccctctttctccttcacgcaacaacaccaactccttctccttagttcattttc 335
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 62 taatggcccctctttctccttcacgcaacaacaccagctccttctccttagttcattttc 121
Query: 336 tttgttgcagcacc 349
||||||||||||||
Sbjct: 122 tttgttgcagcacc 135
>gnl|LJGI|TC75314 similar to UniRef100_Q0DEL4 Cluster: Os06g0146500 protein; n=1;
Oryza sativa Japonica Group|Rep: Os06g0146500 protein -
Oryza sativa subsp. japonica (Rice), partial (13%)
Length = 775
Score = 151 bits (76), Expect = 7e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 528 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 417
Query: 588 gcaccacatgaaccatcaccatgg 611
|||| |||||||||| ||||||||
Sbjct: 418 gcacgacatgaaccaccaccatgg 441
>gnl|LJGI|TC74357 similar to UniRef100_Q6CA16 Cluster: Similarity; n=1; Yarrowia
lipolytica|Rep: Similarity - Yarrowia lipolytica
(Candida lipolytica), partial (12%)
Length = 781
Score = 151 bits (76), Expect = 7e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 528 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 461
Query: 588 gcaccacatgaaccatcaccatgg 611
|||| |||||||||| ||||||||
Sbjct: 462 gcacgacatgaaccaccaccatgg 485
>gnl|LJGI|TC59377 similar to UniRef100_Q9SET1 Cluster: Cell wall-plasma membrane
linker protein homolog; n=1; Arabidopsis thaliana|Rep:
Cell wall-plasma membrane linker protein homolog -
Arabidopsis thaliana (Mouse-ear cress), partial (7%)
Length = 2110
Score = 151 bits (76), Expect = 7e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 528 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcttcttctttcttcctcacgaagccaccaccgatggccacccacaacaccatcatggac 449
Query: 588 gcaccacatgaaccatcaccatgg 611
|||| |||||||||| ||||||||
Sbjct: 450 gcacgacatgaaccaccaccatgg 473