Miyakogusa Predicted Gene

Lj0g3v0069809.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0069809.1 tr|B9H4K8|B9H4K8_POPTR DNA topoisomerase
OS=Populus trichocarpa GN=POPTRDRAFT_861019 PE=3
SV=1,79.24,0,PRTPISMRASEI,DNA topoisomerase, type IA;
TOPOISOMERASE_I_PROK,DNA topoisomerase, type IA, active
sit,CUFF.3360.1
         (1359 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP039068 similar to UniRef100_A7QSU2 Cluster: DNA topoi...   468   e-131

>gnl|LJGI|BP039068 similar to UniRef100_A7QSU2 Cluster: DNA topoisomerase; n=1; Vitis
            vinifera|Rep: DNA topoisomerase - Vitis vinifera (Grape),
            partial (16%)
          Length = 467

 Score =  468 bits (236), Expect = e-131
 Identities = 243/244 (99%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1045 ggatgcttgggtttccctcagtgtaggaatgccgtttggctccctggatcagtatcagaa 1104
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1    ggatgcttgggtttccctcagtgtaggaatgccgtt-ggctccctggatcagtatcagaa 59

                                                                        
Query: 1105 gcagctgtgaccaccaatccttgcaacttctgcactcctggtcctgtttaccggattcag 1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   gcagctgtgaccaccaatccttgcaacttctgcactcctggtcctgtttaccggattcag 119

                                                                        
Query: 1165 ttgaagtttcggcagctggaaataccaccaaactacaatatcaaccatttgggttgcatt 1224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  ttgaagtttcggcagctggaaataccaccaaactacaatatcaaccatttgggttgcatt 179

                                                                        
Query: 1225 ggtggctgtgatgagattctcagacagttgactgaaatatgtggcactggccctcgcatg 1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  ggtggctgtgatgagattctcagacagttgactgaaatatgtggcactggccctcgcatg 239

                
Query: 1285 ccag 1288
            ||||
Sbjct: 240  ccag 243