Miyakogusa Predicted Gene
- Lj0g3v0065939.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0065939.1 Non Chatacterized Hit- tr|I3S7K3|I3S7K3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RIBOSOMAL_L15,Ribosomal protein L15, conserved site; 60S
RIBOSOMAL PROTEIN L27A,NULL; no description,CUFF.3083.1
(447 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63348 similar to UniRef100_O82529 Cluster: Ribosomal ... 886 0.0
gnl|LJGI|AV429069 similar to UniRef100_Q3HVL2 Cluster: Ribosomal... 549 e-156
gnl|LJGI|TC65082 349 9e-96
gnl|LJGI|TC65179 similar to UniRef100_Q3HVL2 Cluster: Ribosomal ... 295 1e-79
gnl|LJGI|TC72620 similar to UniRef100_Q9MAW6 Cluster: 60S riboso... 82 3e-15
gnl|LJGI|BI420812 similar to UniRef100_Q56FC9 Cluster: Ribosomal... 62 3e-09
gnl|LJGI|TC77496 58 5e-08
>gnl|LJGI|TC63348 similar to UniRef100_O82529 Cluster: Ribosomal protein L27a; n=1;
Petunia x hybrida|Rep: Ribosomal protein L27a - Petunia
hybrida (Petunia), partial (97%)
Length = 721
Score = 886 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus
Query: 1 atgacaacccgcttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 atgacaacccgcttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggc 122
Query: 61 cgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccac 182
Query: 121 caccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggtatgcgctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggtatgcgctac 242
Query: 181 ttccacaagctccggaaccagttccattgcccgatcgtcaacgtcgagaagctctggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttccacaagctccggaaccagttccattgcccgatcgtcaacgtcgagaagctctggtct 302
Query: 241 ctcctgccgcaagaggcgaaggacaaggccgcgaaatccaagggcaccgcacctgtcgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcctgccgcaagaggcgaaggacaaggccgcgaaatccaagggcaccgcacctgtcgtc 362
Query: 301 gatgtcacgcagtatggtttcttcaaggttctcggcaaaggtgtcctccctgagaatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gatgtcacgcagtatggtttcttcaaggttctcggcaaaggtgtcctccctgagaatcag 422
Query: 361 ccacttgttgtgaaggctaagctgatttccaagatcgctgagaagaagatcaaagaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccacttgttgtgaaggctaagctgatttccaagatcgctgagaagaagatcaaagaggct 482
Query: 421 ggtggcgctgttcttcttactgcttag 447
|||||||||||||||||||||||||||
Sbjct: 483 ggtggcgctgttcttcttactgcttag 509
>gnl|LJGI|AV429069 similar to UniRef100_Q3HVL2 Cluster: Ribosomal protein L27a-like
protein; n=1; Solanum tuberosum|Rep: Ribosomal protein
L27a-like protein - Solanum tuberosum (Potato), partial
(74%)
Length = 556
Score = 549 bits (277), Expect = e-156
Identities = 338/357 (94%), Gaps = 1/357 (0%)
Strand = Plus / Plus
Query: 1 atgacaacccgcttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 atgacaacccgcttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggc 99
Query: 61 cgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccac 159
Query: 121 caccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggtatgcgctac 180
|||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct: 160 caccgcatcctcttggacaagtaccatactggctacttcggcaaggtcggaatgcgctac 219
Query: 181 ttccacaagctccggaaccagttccattgcccgatcgtcaacgtcgagaagctctggtct 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 220 ttccacaagctccggaaccagttccattgcccgaacgtcaacgtcgagaagctctggtgt 279
Query: 241 ctcctgccgcaagaggcgaaggacaaggccgcgaaatccaagggcaccgcacctgtcgtc 300
|| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct: 280 cttctgccgcaagaggccaaggacaagggcgcgaattccaagggcaccgcacctgtcgtt 339
Query: 301 gatgtcacgcagtatggtttcttcaaggttctcggcaaaggtgtcctccctgagaat 357
||||| ||||||| |||||||||||| ||| | ||||||||| ||||| |||||||
Sbjct: 340 gatgttacgcagtttggtttcttcaa-gttattcgcaaaggtgccctccttgagaat 395
>gnl|LJGI|TC65082
Length = 679
Score = 349 bits (176), Expect = 9e-96
Identities = 379/447 (84%), Gaps = 6/447 (1%)
Strand = Plus / Plus
Query: 1 atgacaacccgcttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggc 60
||||| ||||| |||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct: 47 atgacgacccgtttcaagaagaacaggaagaagcgcggccacgtgagcgccggtcacggc 106
Query: 61 cgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccac 120
||||||||||||||| | |||||||| ||||| | || |||||||||||||||||||||
Sbjct: 107 cgtatcggaaagcacaggaagcatcctggaggtcgcggtaacgccggtggcatgcaccac 166
Query: 121 caccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggtatgcgctac 180
||||||||| | ||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct: 167 caccgcatcttgttcgacaagtaccatcctggttacttcgggaaagtgggtatgcgttac 226
Query: 181 ttccacaagctccggaaccagttccattgcccgatcgtcaacgtcgagaagctctggtct 240
|||||||||||||| |||||||| || ||||| || |||||| |||||||||||||||||
Sbjct: 227 ttccacaagctccgcaaccagtttcactgccccattgtcaacatcgagaagctctggtct 286
Query: 241 ctcctgccgcaagaggcgaaggacaaggccgcgaaatccaagggcaccgcacctgtcgtc 300
|| || || || || | ||||||||||||| ||||||| | | |||||||| ||
Sbjct: 287 cttctccctcaggatgtgaaggacaaggcc------tccaaggacgctgcacctgtggtt 340
Query: 301 gatgtcacgcagtatggtttcttcaaggttctcggcaaaggtgtcctccctgagaatcag 360
||||| || |||||||| | ||| ||||| || ||||| ||||| | ||| || |||
Sbjct: 341 gatgttacccagtatggatactttaaggtgcttggcaagggtgtgttgccttccaaccag 400
Query: 361 ccacttgttgtgaaggctaagctgatttccaagatcgctgagaagaagatcaaagaggct 420
|| |||||||| ||||| ||||| | |||||||||||||||||||||||||| || |||
Sbjct: 401 ccccttgttgttaaggccaagcttgtctccaagatcgctgagaagaagatcaaggaagct 460
Query: 421 ggtggcgctgttcttcttactgcttag 447
||||| |||||| ||||||| ||||||
Sbjct: 461 ggtggtgctgttgttcttacagcttag 487
>gnl|LJGI|TC65179 similar to UniRef100_Q3HVL2 Cluster: Ribosomal protein L27a-like
protein; n=1; Solanum tuberosum|Rep: Ribosomal protein
L27a-like protein - Solanum tuberosum (Potato), complete
Length = 639
Score = 295 bits (149), Expect = 1e-79
Identities = 362/433 (83%)
Strand = Plus / Plus
Query: 13 ttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggccgtatcggaaag 72
|||||||||||| | |||||| | |||||||| |||||||||||||| || ||||| |||
Sbjct: 63 ttcaagaagaacaggaagaagagaggccacgtcagcgccggccacggtcgaatcggcaag 122
Query: 73 caccgcaagcatcccggaggaaggggaaacgccggtggcatgcaccaccaccgcatcctc 132
|||||||||||||| ||||| | || |||||||| ||||||||||||||||||||||||
Sbjct: 123 caccgcaagcatccaggaggtcgcggtaacgccggaggcatgcaccaccaccgcatcctc 182
Query: 133 ttcgacaagtaccatcctggttacttcggcaaggtcggtatgcgctacttccacaagctc 192
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 183 ttcgacaagtaccatcccggttacttcggcaaggttggtatgcgctacttccacaagctc 242
Query: 193 cggaaccagttccattgcccgatcgtcaacgtcgagaagctctggtctctcctgccgcaa 252
|| ||||||||| |||||| | ||||||| |||| ||||||||||| | || || |||
Sbjct: 243 cgcaaccagttcttttgccccaccgtcaacatcgacaagctctggtcattgcttccacaa 302
Query: 253 gaggcgaaggacaaggccgcgaaatccaagggcaccgcacctgtcgtcgatgtcacgcag 312
|||| |||||| | ||||| || ||| | || || || |||||||||| |
Sbjct: 303 gaggtgaaggatcaagccgccaatgataagtctaaggctccagtgatcgatgtcaccaat 362
Query: 313 tatggtttcttcaaggttctcggcaaaggtgtcctccctgagaatcagccacttgttgtg 372
||||| | |||||||||| | || ||||| || | |||| |||||||| |||||||
Sbjct: 363 tatgggtacttcaaggttttgggtaaaggggttttgcctgctaatcagcctgttgttgtt 422
Query: 373 aaggctaagctgatttccaagatcgctgagaagaagatcaaagaggctggtggcgctgtt 432
||||| ||||| ||||| ||||| ||||||||||||||||| ||| |||||| ||||||
Sbjct: 423 aaggcgaagctcatttcgaagattgctgagaagaagatcaaggagaatggtggtgctgtt 482
Query: 433 cttcttactgctt 445
|||||||||||||
Sbjct: 483 cttcttactgctt 495
>gnl|LJGI|TC72620 similar to UniRef100_Q9MAW6 Cluster: 60S ribosomal protein L27a;
n=1; Panax ginseng|Rep: 60S ribosomal protein L27a -
Panax ginseng (Korean ginseng), partial (22%)
Length = 887
Score = 81.8 bits (41), Expect = 3e-15
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 359 agccacttgttgtgaaggctaagctgatttccaagatcgctgagaagaagatcaaagagg 418
|||| |||||||| ||||| ||||| ||| |||||||||||||| ||||||||| || |
Sbjct: 693 agcctcttgttgttaaggccaagcttgtttacaagatcgctgagacgaagatcaaggaag 752
Query: 419 ctggtggcgctgttcttcttactgcttag 447
|||||| |||||| ||||||||||||||
Sbjct: 753 ttggtggtgctgttgttcttactgcttag 781
>gnl|LJGI|BI420812 similar to UniRef100_Q56FC9 Cluster: Ribosomal protein L27a; n=1;
Lysiphlebus testaceipes|Rep: Ribosomal protein L27a -
Lysiphlebus testaceipes (Greenbugs aphid parastoid),
partial (87%)
Length = 490
Score = 61.9 bits (31), Expect = 3e-09
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 51 cggccacggccgtatcggaaagcaccgcaagcatcccggaggaaggggaaacgccggtgg 110
|||||| || ||| |||| |||||||||||||| || || || | || ||||| |||||
Sbjct: 54 cggccatggtcgtgtcggcaagcaccgcaagcaccctggtggtcgcggtaacgctggtgg 113
Query: 111 catgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcgg 170
| ||||||||| | || ||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 114 tctccaccaccacaggattaacttcgacaagtaccatcctggctacttcggaaaggttgg 173
Query: 171 tat 173
|||
Sbjct: 174 tat 176
>gnl|LJGI|TC77496
Length = 376
Score = 58.0 bits (29), Expect = 5e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 13 ttcaagaagaaccgtaagaagcgtggccacgtgagcgccggccacggccgtatcggaaag 72
|||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||
Sbjct: 295 ttcaagaagaacatgaagaagcgcagccacgtgagcaccggtcacggccgtatcgaaaag 354
Query: 73 c 73
|
Sbjct: 355 c 355