Miyakogusa Predicted Gene
- Lj0g3v0064859.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0064859.1 tr|G7JY32|G7JY32_MEDTR F-box/FBD/LRR-repeat
protein OS=Medicago truncatula GN=MTR_5g045170 PE=4
SV=1,33.33,9e-19,F-box domain,F-box domain, cyclin-like; FAMILY NOT
NAMED,NULL; no description,NULL,CUFF.3001.1
(802 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC599318 weakly similar to UniRef100_A2Q1U7 Cluster: Cy... 829 0.0
gnl|LJGI|TC59854 similar to UniRef100_A7QK60 Cluster: Chromosome... 121 7e-27
gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome... 107 1e-22
gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome... 66 4e-10
gnl|LJGI|TC72625 similar to UniRef100_A7QK60 Cluster: Chromosome... 64 1e-09
gnl|LJGI|DC599890 similar to UniRef100_A7QK60 Cluster: Chromosom... 62 6e-09
gnl|LJGI|TC60064 60 2e-08
gnl|LJGI|FS342663 similar to UniRef100_A7QK60 Cluster: Chromosom... 58 9e-08
gnl|LJGI|FS329231 similar to UniRef100_A2Q1U7 Cluster: Cyclin-li... 58 9e-08
gnl|LJGI|FS341858 similar to UniRef100_A7QK60 Cluster: Chromosom... 54 1e-06
>gnl|LJGI|DC599318 weakly similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD;
n=1; Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (19%)
Length = 564
Score = 829 bits (418), Expect = 0.0
Identities = 437/441 (99%), Gaps = 2/441 (0%)
Strand = Plus / Plus
Query: 1 atggatgacagaattagcactttgacagatgatctcctctgtcgcatcctctcgtttctt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atggatgacagaattaggactttgacagatgatctcctctgtcgcatcctctcgtttctt 185
Query: 61 ccaacggaacaagcagttgccacaagcattctttcaaagaggtggaagcctatctggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ccaacggaacaagcagttgccacaagcattctttcaaagaggtggaagcctatctggatc 245
Query: 121 tcagtccccgttctcgacttcgacaatcaaacccatctgagaaaaggtaaaccctcatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcagtccccgttctcgacttcgacaatcaaacccatctgagaaaaggtaaaccctcatat 305
Query: 181 tcctttgaaaggttaatatacgcaaccattcaagctagagatccgcaacaatccattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcctttgaaaggttaatatacgcaaccattcaagctagagatccgcaacaatccattaaa 365
Query: 241 acttttcgtctcaaatatgagcttcttgaccttgaactttcggaggaacgagcgaatgct 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acttttcgtctcanatatgagcttcttgaccttgaactttcggaggaacgagcgaatgct 425
Query: 301 gatatcgatgtttggataaaaactgctataaaccatggggttgagaaccttgaaatctac 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gatatcgatgtttggat-aaaactgctataaaccatggggttgagaaccttgaaatctac 484
Query: 361 cttgattgcaactctgtgcctttcgattatatcgttaggttaacctgctgcggcattttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttgattgcaactctgtgcctttcgattatatcgttaggttaacctgctgcggcattttc 544
Query: 421 agctgcaaaacccttgttgtt 441
|||||| ||||||||||||||
Sbjct: 545 agctgc-aaacccttgttgtt 564
>gnl|LJGI|TC59854 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 848
Score = 121 bits (61), Expect = 7e-27
Identities = 154/185 (83%)
Strand = Plus / Plus
Query: 407 gctgcggcattttcagctgcaaaacccttgttgttctcaagttgaaagaggtatctctag 466
||||| ||||||||||||| | ||| ||||||||||| |||||||||| | ||| |||
Sbjct: 552 gctgctgcattttcagctgtagaactcttgttgttcttaagttgaaagggctatatctta 611
Query: 467 ctgcttctggttctgttgagcttccctcactcaaatgcctatggttgctacgtgttgaat 526
||| || | |||||||||| ||||||||||| |||| ||||| ||| | | |||||||
Sbjct: 612 ctgattattgttctgttgaacttccctcacttaaatccctatatttggttcaagttgaat 671
Query: 527 ttgaagagcctcaatatcttatggagcttctttatggatgtccagagcttgaagatttga 586
||| ||| |||||| |||||||||||||||||||||| ||||| | ||||| ||||||
Sbjct: 672 ttgtagaacctcaaaatcttatggagcttctttatgggtgtcctgttcttgagtatttga 731
Query: 587 aaaca 591
|||||
Sbjct: 732 aaaca 736
Score = 101 bits (51), Expect = 7e-21
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 26 cagatgatctcctctgtcgcatcctctcgtttcttccaacggaacaagcagttgccacaa 85
||||||| ||||||| || ||| ||||| ||||| ||||| ||||||||||| ||||||
Sbjct: 165 cagatgaactcctctctcacattctctcatttctcccaactcaacaagcagttaccacaa 224
Query: 86 gcattctttcaaagaggtggaagcctatctggatctcagtccccgttctcgacttcgac 144
|| |||| |||||| | ||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 225 gcgttctctcaaagcgatggaaacccctctggatctcagtccccgttctcgactacgac 283
>gnl|LJGI|TC81934 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 1384
Score = 107 bits (54), Expect = 1e-22
Identities = 186/230 (80%)
Strand = Plus / Plus
Query: 7 gacagaattagcactttgacagatgatctcctctgtcgcatcctctcgtttcttccaacg 66
||||||||||||| || ||||||| ||||||||| ||| |||| ||||| ||||
Sbjct: 74 gacagaattagcaggttatcagatgaagtcctctgtcacattctcttctttctctcaact 133
Query: 67 gaacaagcagttgccacaagcattctttcaaagaggtggaagcctatctggatctcagtc 126
|||||||| ||||||||||| |||| |||||||| |||| ||| ||||||||||||||
Sbjct: 134 gaacaagctgttgccacaagtgttctctcaaagagatggaggcccctctggatctcagtc 193
Query: 127 cccgttctcgacttcgacaatcaaacccatctgagaaaaggtaaaccctcatattccttt 186
||||||||||||| |||| | ||| | |||| ||||| |||| | | | || ||||
Sbjct: 194 cccgttctcgactacgacgacgaaatctatctcagaaacaacaaacacccttcttgcttt 253
Query: 187 gaaaggttaatatacgcaaccattcaagctagagatccgcaacaatccat 236
|||||||| ||||||||||||||| | | ||| ||||||||||| ||||
Sbjct: 254 gaaaggttcgtatacgcaaccattctaccgagaaatccgcaacaacccat 303
Score = 71.9 bits (36), Expect = 6e-12
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 413 gcattttcagctgcaaaacccttgttgttctcaagttgaaagaggtatctctagctgctt 472
|||||||||| ||| |||||||||||||||||||||| | || | ||||||| ||||
Sbjct: 480 gcattttcagttgccaaacccttgttgttctcaagttaacagggttatctctcaaagctt 539
Query: 473 ctggttctgttgagcttccctcactcaaatgcctat 508
| ||| |||||||||||||||||||||| |||||
Sbjct: 540 tttcttccgttgagcttccctcactcaaatccctat 575
>gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1489
Score = 65.9 bits (33), Expect = 4e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 419 tcagctgcaaaacccttgttgttctcaagttga 451
|||||||||||||||||||||||||||||||||
Sbjct: 552 tcagctgcaaaacccttgttgttctcaagttga 584
Score = 61.9 bits (31), Expect = 6e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 171 accctcatattcctttgaaaggttaatatacgcaaccattcaagctagagatccgcaaca 230
|||||| |||| |||||||| ||| |||||||||||||||| || |||||| ||| |||
Sbjct: 337 accctcctattgctttgaaaagttcatatacgcaaccattctcgccagagatgcgcgaca 396
Query: 231 atccattaaaacttttcgtctcaaatatgag 261
| |||| || ||||||||||||||||||
Sbjct: 397 acccatccgaagctttcgtctcaaatatgag 427
Score = 54.0 bits (27), Expect = 1e-06
Identities = 93/115 (80%)
Strand = Plus / Plus
Query: 26 cagatgatctcctctgtcgcatcctctcgtttcttccaacggaacaagcagttgccacaa 85
||||||| | |||||||| ||| ||||| ||||| | ||| || |||| | ||||||||
Sbjct: 186 cagatgaacccctctgtcacattctctcttttctccaaacacaagaagctgctgccacaa 245
Query: 86 gcattctttcaaagaggtggaagcctatctggatctcagtccccgttctcgactt 140
| |||||||||||||||||| || | |||| |||||||||| |||||||||
Sbjct: 246 gtgttctttcaaagaggtggaggcacctatggacctcagtccccactctcgactt 300
>gnl|LJGI|TC72625 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 1949
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 415 attttcagctgcaaaacccttgttgttctcaagttgaaag 454
|||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1544 atttacagctgcagaacccttgttgttctcaagttgaaag 1583
>gnl|LJGI|DC599890 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 598
Score = 61.9 bits (31), Expect = 6e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 413 gcattttcagctgcaaaacccttgttgttctcaagttga 451
||||||||||||||||||| || ||||||||||||||||
Sbjct: 423 gcattttcagctgcaaaactctggttgttctcaagttga 461
>gnl|LJGI|TC60064
Length = 1179
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 413 gcattttcagctgcaaaacccttgttgttctcaagttg 450
|||||||||||||||| || ||||||||||||||||||
Sbjct: 361 gcattttcagctgcaagactcttgttgttctcaagttg 398
>gnl|LJGI|FS342663 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 675
Score = 58.0 bits (29), Expect = 9e-08
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 35 tcctctgtcgcatcctctcgtttcttccaacggaacaagcagttgccacaagcattcttt 94
||||||||| ||| ||||| ||||| ||||| | ||| | ||||||||||| |||| |
Sbjct: 189 tcctctgtcacatactctcctttctcccaaccaagcaaaccgttgccacaagtgttctct 248
Query: 95 caaagaggtggaagcctatctggatctcagtccccgttctcgacttcga 143
| |||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct: 249 ccaagaggtggaagccactgtggcgttcagttcccgttctcgacttcga 297
>gnl|LJGI|FS329231 similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (16%)
Length = 767
Score = 58.0 bits (29), Expect = 9e-08
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 6 tgacagaattagcactttgacagatgatctcctctgtcgcatcctctcgtttcttccaac 65
|||||| ||||||| ||| ||||||| ||||| |||| ||| ||||| |||||||||||
Sbjct: 311 tgacaggattagcatgttgccagatgaactcctttgtcacattctctcctttcttccaac 370
Query: 66 ggaacaagcagttgccacaagcattctttcaaagaggtggaagcc 110
| || || | ||| ||||||||||||||||||||||||||
Sbjct: 371 tccaatggctgtagtcaccagcattctttcaaagaggtggaagcc 415
>gnl|LJGI|FS341858 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 700
Score = 54.0 bits (27), Expect = 1e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 37 ctctgtcgcatcctctcgtttcttccaacggaacaagcagttgccacaagcattctttca 96
||||||||||| ||||| ||||| ||||| | ||||| ||||| ||||||||||| ||
Sbjct: 124 ctctgtcgcattctctcttttctcccaaccaagcaagctgttgcaacaagcattctctcg 183
Query: 97 aagaggtggaa 107
|||| ||||||
Sbjct: 184 aagaagtggaa 194