Miyakogusa Predicted Gene
- Lj0g3v0062259.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0062259.2 Non Chatacterized Hit- tr|C0PFG6|C0PFG6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,59.65,2e-19,60S ACIDIC
RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein
60S; seg,NULL,CUFF.3017.2
(345 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW604002 similar to UniRef100_Q8H2B9 Cluster: 60s acidi... 377 e-104
gnl|LJGI|TC70041 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 377 e-104
gnl|LJGI|TC67850 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 377 e-104
gnl|LJGI|TC76600 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 353 4e-97
gnl|LJGI|TC67692 similar to UniRef100_A7PPG7 Cluster: Chromosome... 111 3e-24
>gnl|LJGI|BW604002 similar to UniRef100_Q8H2B9 Cluster: 60s acidic ribosomal protein;
n=1; Prunus dulcis|Rep: 60s acidic ribosomal protein -
Prunus dulcis (Almond) (Prunus amygdalus), partial (87%)
Length = 483
Score = 377 bits (190), Expect = e-104
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 1 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 244
Query: 61 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 304
Query: 121 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 364
Query: 181 aagttggcat 190
||||||||||
Sbjct: 365 aagttggcat 374
Score = 83.8 bits (42), Expect = 6e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 258 cccagcagctgctgaggcaaagaaagaggaaaaggtggagga 299
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cccagcagctgctgaggcaaagaaagaggaaaaggtggagga 483
>gnl|LJGI|TC70041 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 638
Score = 377 bits (190), Expect = e-104
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 1 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 187
Query: 61 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 247
Query: 121 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 307
Query: 181 aagttggcat 190
||||||||||
Sbjct: 308 aagttggcat 317
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 258 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 444
Query: 318 tgatatgggtttcagtctctttgattaa 345
||||||||||||||||||||||||||||
Sbjct: 445 tgatatgggtttcagtctctttgattaa 472
>gnl|LJGI|TC67850 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 571
Score = 377 bits (190), Expect = e-104
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 1 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 107
Query: 61 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 167
Query: 121 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 227
Query: 181 aagttggcat 190
||||||||||
Sbjct: 228 aagttggcat 237
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 258 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 364
Query: 318 tgatatgggtttcagtctctttgattaa 345
||||||||||||||||||||||||||||
Sbjct: 365 tgatatgggtttcagtctctttgattaa 392
>gnl|LJGI|TC76600 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 544
Score = 353 bits (178), Expect = 4e-97
Identities = 187/190 (98%)
Strand = Plus / Plus
Query: 1 atgaaggtgatcgctgcttacatgctcgccgtgctcggaggcaacaacagcccctccgcc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 84 atgaaggtgatcgctgcttacatgctcgtcgtgctcggaggcaacaacagcccctccgcc 143
Query: 61 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatgatgataggattgca 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 144 gccgaaatcaagaaaatcatcggctccgttggaggtgatgctgatggtgataggattgca 203
Query: 121 tcatttttgtctgaactcaagggtaaagatttagctgaggttattgcagctggaaaggaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcatttttgtctgagctcaagggtaaagatttagctgaggttattgcagctggaaaggaa 263
Query: 181 aagttggcat 190
||||||||||
Sbjct: 264 aagttggcat 273
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 258 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cccagcagctgctgaggcaaagaaagaggaaaaggtggaggagaaagaggaatctgatga 400
Query: 318 tgatatgggtttcagtctctttgattaa 345
||||||||||||||||||||||||||||
Sbjct: 401 tgatatgggtttcagtctctttgattaa 428
>gnl|LJGI|TC67692 similar to UniRef100_A7PPG7 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 606
Score = 111 bits (56), Expect = 3e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 277 aagaaagaggaaaaggtggaggagaaagaggaatctgatgatgatatgggtttcagtctc 336
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 348 aagaaagaggaaaaggtggaggagaaggaggaatcagatgatgacatgggtttcagtctc 407
Query: 337 tttgatta 344
||||||||
Sbjct: 408 tttgatta 415