Miyakogusa Predicted Gene
- Lj0g3v0060759.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0060759.1 tr|A2Q465|A2Q465_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_040s0046 PE,92.46,0,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; HELICASE_ATP_BIND_1,Helicase,
superfamily 1/2, ATP-,CUFF.2797.1
(1515 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80913 homologue to UniRef100_A2Q465 Cluster: Helicase... 1243 0.0
gnl|LJGI|TC82337 homologue to UniRef100_A2Q465 Cluster: Helicase... 842 0.0
gnl|LJGI|TC69978 homologue to UniRef100_A7PCT3 Cluster: Chromoso... 86 7e-16
>gnl|LJGI|TC80913 homologue to UniRef100_A2Q465 Cluster: Helicase, C-terminal; n=1;
Medicago truncatula|Rep: Helicase, C-terminal - Medicago
truncatula (Barrel medic), partial (38%)
Length = 756
Score = 1243 bits (627), Expect = 0.0
Identities = 630/631 (99%)
Strand = Plus / Plus
Query: 1 atgagccgctacgacagccgctccgccgacccctcttcataccgtgatcgaagaagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atgagccgctacgacagccgctccgccgacccctcttcataccgtgatcgaagaagtgat 185
Query: 61 tctgggctgggtgcacctgctgcctccaccgggtacggtggttcgagcataaagaatcat 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctgggctgggggcacctgctgcctccaccgggtacggtggttcgagcataaagaatcat 245
Query: 121 gacgacggtggttcagggtcgccccgtaagataaatttggatgggttgtcgcatttcgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gacgacggtggttcagggtcgccccgtaagataaatttggatgggttgtcgcatttcgag 305
Query: 181 aaaaacttctacactgaatcaccctctgttagggcaatgactgaagcagaggttgatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaacttctacactgaatcaccctctgttagggcaatgactgaagcagaggttgatgag 365
Query: 241 tatcgcctgcgacgggaaatcacagttgaaggccgagatgttcccaaacccgtcaagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tatcgcctgcgacgggaaatcacagttgaaggccgagatgttcccaaacccgtcaagaca 425
Query: 301 tttaacgatgtcggttttccagagtatgtgttggaagaagttaagaaagctggctttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttaacgatgtcggttttccagagtatgtgttggaagaagttaagaaagctggctttgtt 485
Query: 361 gaacctacacccattcagtcacaaggttggccaatggctttgaaggggcgtgatctgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaacctacacccattcagtcacaaggttggccaatggctttgaaggggcgtgatctgata 545
Query: 421 ggaattgcagaaaccggttcagggaagacacttgcgtacttgttgcctgctattgtgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggaattgcagaaaccggttcagggaagacacttgcgtacttgttgcctgctattgtgcat 605
Query: 481 gttaatgcgcagccaattctagaccctggcgatggacctattgtgttagtattggcccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gttaatgcgcagccaattctagaccctggcgatggacctattgtgttagtattggcccca 665
Query: 541 acacgtgaacttgctgtccaaatacaacaagagtgtactaagtttggtgcatcgtcaagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acacgtgaacttgctgtccaaatacaacaagagtgtactaagtttggtgcatcgtcaagg 725
Query: 601 attaagagtacgtgcatatatggtggggttc 631
|||||||||||||||||||||||||||||||
Sbjct: 726 attaagagtacgtgcatatatggtggggttc 756
>gnl|LJGI|TC82337 homologue to UniRef100_A2Q465 Cluster: Helicase, C-terminal; n=1;
Medicago truncatula|Rep: Helicase, C-terminal - Medicago
truncatula (Barrel medic), partial (28%)
Length = 676
Score = 842 bits (425), Expect = 0.0
Identities = 439/441 (99%), Gaps = 2/441 (0%)
Strand = Plus / Plus
Query: 1077 gattactaggcagcttcgtatggacggttggcctgcactttcaattcatggagataaaag 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gattactaggcagcttcgtatggacggttggcctgcactttcaattcatggagataaaag 60
Query: 1137 tcaagcagaaagagactgggtgctctcggagtttaaatctggaaagagtcctataatgac 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaagcagaaagagactgggtgctctcggagtttaaatctggaaagagtcctataatgac 120
Query: 1197 ggcgacagatgttgcagctcgcggattagatgtgaaggatgtaaagtatgtgataaatta 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcgacagatgttgcagctcgcggattagatgtgaaggatgtaaagtatgtgataaatta 180
Query: 1257 tgacttcccgggatcacttgaggattatgttcatcgcattggtcggactgggagagctgg 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacttcccgggatcacttgaggattatgttcatcgcattggtcggactgggagagctgg 240
Query: 1317 tgcaaaaggaactgcg-tacacattcttcacagctgctaatgccagatttgcaaaggaac 1375
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcaaaaggaactgcgttacacattcttcacagctgctaatgccagatttgcaaaggaac 300
Query: 1376 ttataactatactcgaggaagctggacagagagtgagccctgacttggcagcaatgggac 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttataactatactcgaggaagctggacagagagtgagccctgacttggcagcaatgggac 360
Query: 1436 gaggtgcacctcctccaccctcaggaggattccgagatcgtgggaagggttatggcagtg 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggtgcacctcctccaccctcaggaggattccgagatcgtgggaagggttatggcagtg 420
Query: 1496 gtcg-cccatggagctgattg 1515
|||| ||||||||||||||||
Sbjct: 421 gtcgacccatggagctgattg 441
>gnl|LJGI|TC69978 homologue to UniRef100_A7PCT3 Cluster: Chromosome chr17
scaffold_12, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_12, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (59%)
Length = 1175
Score = 85.7 bits (43), Expect = 7e-16
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 754 ttggatgaagctgataggatgttggacatggggtttgatcctcagatacggaagattgtc 813
||||||||||||||| | |||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 56 ttggatgaagctgatcgaatgttggacatgggttttgaacctcagatacggaaaattgtt 115
Query: 814 tcacagattcgtcctgaccgtcaaactctgtactggagtgctacctggccaaaggaggtt 873
|||||||| || || | || || || |||||||| ||||| ||||||| |||||||
Sbjct: 116 agccagattcgaccagataggcagacactatactggagcgctacatggccaagggaggtt 175
Query: 874 gaa 876
|||
Sbjct: 176 gaa 178