Miyakogusa Predicted Gene
- Lj0g3v0060299.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0060299.1 tr|Q2HW32|Q2HW32_MEDTR Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nit,92.33,0,WD40,WD40
repeat; WD_REPEATS_1,WD40 repeat, conserved site; SUBFAMILY NOT
NAMED,NULL; WD40 REPEAT
PR,NODE_26523_length_1741_cov_139.976456.path1.1
(1722 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60845 homologue to UniRef100_Q2HW32 Cluster: Lissence... 1548 0.0
gnl|LJGI|TC82200 homologue to UniRef100_Q2HW32 Cluster: Lissence... 1059 0.0
gnl|LJGI|TC70086 homologue to UniRef100_Q2HW32 Cluster: Lissence... 769 0.0
gnl|LJGI|FS330577 similar to UniRef100_A7PRX2 Cluster: Chromosom... 153 4e-36
gnl|LJGI|TC77986 homologue to UniRef100_A7QQ63 Cluster: Chromoso... 90 5e-17
gnl|LJGI|TC66714 similar to UniRef100_A7PRX2 Cluster: Chromosome... 90 5e-17
gnl|LJGI|TC77627 homologue to UniRef100_A7PF76 Cluster: Chromoso... 60 5e-08
>gnl|LJGI|TC60845 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago truncatula|Rep:
Lissencephaly type-1-like homology motif; CTLH,
C-terminal to LisH motif; Nitrous oxide reductase,
N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (23%)
Length = 798
Score = 1548 bits (781), Expect = 0.0
Identities = 793/797 (99%)
Strand = Plus / Plus
Query: 713 tccctcctgttgctgcaactgctaatgctaatgctttggctggttggatggccaatgcct 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tccctcctgttgctgcaactgctaatgctaatgctttggctggttggatggccaatgcct 61
Query: 773 cagcttcgtcatctgtccaagcagctgttgccacagcgtcaactattccagtgccacaga 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cagcttcgtcatctgtccaagcagctgttgccacagcgtcaactattccagtgccacaga 121
Query: 833 atcaagtgtctatcttgaaacgtcctaaaacacctccagcaactcctgggatggttgatt 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atcaagtgtctatcttgaaacgtcctaaaacacctccagcaactcctgggatggttgatt 181
Query: 893 atcagaatgctgatcatgaacagctaatgaaaaggcttcgccctaatcattctgtagagg 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atcagaatgctgatcatgaacagctaatgaaaaggcttcgccctaatcattctgtagagg 241
Query: 953 agatgtcatatcctgtggctcgacaagcctcttggtcattggatgatctgccaagaacgg 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agatgtcatatcctgtggctcgacaagcctcttggtcattggatgatctgccaagaacgg 301
Query: 1013 tgactatgactttgcatcaggggtcctctgttacaagcatggattttcatccttctcacc 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgactatgactttgcatcaggggtcctctgttacaagcatggattttcatccttctcacc 361
Query: 1073 ataccttacttcttgttggttctaataatggtgagattaccctctgggaactcagtttgc 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ataccttacttcttgttggttctaataatggtgagattaccctctgggaactcagtttgc 421
Query: 1133 gagaaaggttggtctcaaagccgttcaagttatgggatgcgtcagcaagcatgctaccat 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagaaaggttggtctcaaagccgttcaagttatgggatgcgtcagcaagcatgctaccat 481
Query: 1193 ttcaggcagctgcggtcaaggatgcacctatttctgtcagtcgtgtcacgtggagccctg 1252
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 482 ttcagacagctgcggtcaaggatgcacctatttctgttagtcgtgtcacgtggagccctg 541
Query: 1253 atggaagttttgtaggtgttgcttttactaaacatttgattcatttatatgcctacactg 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atggaagttttgtaggtgttgcttttactaaacatttgattcatttatatgcctacactg 601
Query: 1313 gatcaaatgacctagcccagcgcatagaggttgatgcccatattggtggtgtgaatgatt 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gatcaaatgacctagcccagcgcatagaggttgatgcccatattggtggtgtgaatgatt 661
Query: 1373 tggcatttgctcatccaaataaacagctatgtattgtgacttgtggggacgataaattga 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tggcatttgctcatccaaataaacagctatgtattgtgacttgtggggacgataaattga 721
Query: 1433 taaaggtgtgggatacaaatggccgaagactatttacctttgaggggcatgaggcgcctg 1492
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 722 taaaggtgtgggatacaaatggccgaagactatttacctttgaggggtatgaggcacctg 781
Query: 1493 tatattctatttgtcct 1509
|||||||||||||||||
Sbjct: 782 tatattctatttgtcct 798
>gnl|LJGI|TC82200 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago
truncatula|Rep: Lissencephaly type-1-like homology
motif; CTLH, C-terminal to LisH motif; Nitrous oxide
reductase, N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (24%)
Length = 952
Score = 1059 bits (534), Expect = 0.0
Identities = 747/818 (91%)
Strand = Plus / Plus
Query: 1 atgacttctttgagcagggaattggtgtttctcatactccagtttctggatgaggagaag 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atgacttctttgagcagagaattggtgtttctcatactccagtttctggatgaggagaac 188
Query: 61 ttcaaagagtctgttcacaaacttgagaaagaatcagggttctttttcaatatgaagtac 120
|||||||||||||| ||||| |||||| ||||||| | ||| |||||||| |||||||||
Sbjct: 189 ttcaaagagtctgtgcacaagcttgagcaagaatctgcgttttttttcaacatgaagtac 248
Query: 121 tttgaggaaaaggtgcaggctggcgaatgggaagaagttgagaagtacttaacagggttt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 249 tttgaggaaaaagtgcaggctggcgaatgggaagaagttgagaagtacttatcagggttt 308
Query: 181 actaaagttgacgataatagatactcaatgaaaatattctttgaaatcagaaagcagaag 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 309 accaaagttgacgataatagatactcaatgaaaatattctttgaaatcaggaagcagaaa 368
Query: 241 tatctggaagcacttgatcggcaagacaaagcaaaagctgtggagatattagttggtgat 300
||||||||||||||||||||||||||||| |||| ||||| ||||||||||| || |||
Sbjct: 369 tatctggaagcacttgatcggcaagacaagccaaaggctgtagagatattagtcggcgat 428
Query: 301 ttaaaagtgttctccaccttcaatgaggaactatacaaagaaatcactcagctgttaaca 360
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 429 ttaaaagtgttctcaaccttcaatgaggagctatacaaagaaatcacccagctattaact 488
Query: 361 cttactaatttcagagagaatgagcagctgtctaaatatggtgataccaaaactgctagg 420
|||||||||||||| |||||||||||| ||||||| || |||| |||||||||||| |
Sbjct: 489 cttactaatttcagggagaatgagcagttgtctaagtacagtgacaccaaaactgctcga 548
Query: 421 agcattatgttgatagaactaaaaaagctcatagaggcaaatcctcttttccgtgataag 480
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 549 agcattatgttgatagagctaaaaaaactcatagaggcaaatcctcttttccgtgataag 608
Query: 481 cttgtcttccctaccctcaggtcatcaagactgcgaactttaatcaatcaaagtctgaac 540
|||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 609 cttgtctttcctacccttaagtcatcaagactgcgaactttaattaatcaaagtctgaac 668
Query: 541 tggcagcaccagctctgtaaaaacccgaagccaaatccagatataaagactttatttaca 600
|||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |||
Sbjct: 669 tggcagcatcagctttgtaaaaacccaaatccaaatccagatataaagactttattcaca 728
Query: 601 gatcatacttgtgcacctcctaatggtcctctggcaccaacccccatcaaccttccgatt 660
||||| | || |||||| |||||||||||||||| || | ||| |||| ||||| |||
Sbjct: 729 gatcacgcatgcgcacctactaatggtcctctggcgcctagccctgtcaatcttccaatt 788
Query: 661 gctgcactcgcaaagcctgctgcttatacttcacttggagctcacggtcccttccctcct 720
|||||| | || ||||||||||||||||||||| |||||||||| |||||||| || |||
Sbjct: 789 gctgcagttgcgaagcctgctgcttatacttcagttggagctcatggtccctttccacct 848
Query: 721 gttgctgcaactgctaatgctaatgctttggctggttggatggccaatgcctcagcttcg 780
| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 849 gctgctgcaacttctaatgctaatgctttagctggttggatggccaatgcctcagcttca 908
Query: 781 tcatctgtccaagcagctgttgccacagcgtcaactat 818
|||||||| ||||||||||||| |||||| |||||||
Sbjct: 909 tcatctgttcaagcagctgttgtcacagcaccaactat 946
>gnl|LJGI|TC70086 homologue to UniRef100_Q2HW32 Cluster: Lissencephaly type-1-like
homology motif; CTLH, C-terminal to LisH motif; Nitrous
oxide reductase, N-terminal; WD40-like; Quinonprotein
alcohol dehydrogenase-like; n=1; Medicago
truncatula|Rep: Lissencephaly type-1-like homology
motif; CTLH, C-terminal to LisH motif; Nitrous oxide
reductase, N-terminal; WD40-like; Quinonprotein alcohol
dehydrogenase-like - Medicago truncatula (Barrel medic),
partial (11%)
Length = 655
Score = 769 bits (388), Expect = 0.0
Identities = 397/399 (99%), Gaps = 1/399 (0%)
Strand = Plus / Plus
Query: 1 atgacttctttgagcagggaattggtgtttctcatactccagtttctggatgaggagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgacttctttgagcagggaattggtgtttctcatactccagtttctggatgaggagaag 317
Query: 61 ttcaaagagtctgttcacaaacttgagaaagaatcagggttctttttcaatatgaagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcaaagagtctgttcacaaacttgagaaagaatcagggttctttttcaatatgaagtac 377
Query: 121 tttgaggaaaaggtgcaggctggcgaatgggaagaagttgagaagtacttaacagggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttgaggaaaaggtgcaggctggcgaatgggaagaagttgagaagtacttaacagggttt 437
Query: 181 actaaagttgacgataatagatactcaatgaaaatattctttgaaatcagaaagcagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actaaagttgacgataatagatactcaatgaaaatattctttgaaatcagaaagcagaag 497
Query: 241 tatctggaagcacttgatcggcaagacaaagcaaaagctgtggagatattagttggtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tatctggaagcacttgatcggcaagacaaagcaaaagctgtggagatattagttggtgat 557
Query: 301 ttaaaagtgttctccaccttcaatgaggaactatacaaagaaatcactcagctgttaaca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 558 ttaaaagtgttctccaccttcaatgaggaactatacanagaaatcactcagctgttaaca 617
Query: 361 cttactaatttcagagagaatgagcagctgtctaaatat 399
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 cttactaatttcagag-gaatgagcagctgtctaaatat 655
>gnl|LJGI|FS330577 similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 640
Score = 153 bits (77), Expect = 4e-36
Identities = 203/245 (82%)
Strand = Plus / Plus
Query: 7 tctttgagcagggaattggtgtttctcatactccagtttctggatgaggagaagttcaaa 66
|||||||| |||||||||||| ||||||| || || ||||| || ||||||||||||||
Sbjct: 190 tctttgagtagggaattggtgcttctcattcttcaatttcttgaggaggagaagttcaag 249
Query: 67 gagtctgttcacaaacttgagaaagaatcagggttctttttcaatatgaagtactttgag 126
|| |||| ||||| |||||| | ||||| ||||||| |||||||||||||| |||||
Sbjct: 250 gacactgtacacaagcttgagcatgaatctgggttctacttcaatatgaagtattttgaa 309
Query: 127 gaaaaggtgcaggctggcgaatgggaagaagttgagaagtacttaacagggtttactaaa 186
|| |||| | |||||| || ||||| || ||||||||||| | | ||||||||||||
Sbjct: 310 gagaaggccctggctggagagtgggatgaggttgagaagtatctgtctgggtttactaaa 369
Query: 187 gttgacgataatagatactcaatgaaaatattctttgaaatcagaaagcagaagtatctg 246
|| || || ||| |||| || ||||||||||||||||| || || ||||||||||||||
Sbjct: 370 gtggatgacaatcgatattccatgaaaatattctttgagattaggaagcagaagtatctt 429
Query: 247 gaagc 251
|||||
Sbjct: 430 gaagc 434
>gnl|LJGI|TC77986 homologue to UniRef100_A7QQ63 Cluster: Chromosome undetermined
scaffold_141, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_141,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 702
Score = 89.7 bits (45), Expect = 5e-17
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 40 cagtttctggatgaggagaagttcaaagagtctgttcacaaacttgagaaagaatcaggg 99
||||||||||||||||| |||||||||||| | |||||||| |||||| |||| || |||
Sbjct: 246 cagtttctggatgaggaaaagttcaaagagacagttcacaagcttgagcaagagtctggg 305
Query: 100 ttctttttcaatatgaagtactttgagga 128
|| || ||||| |||||||| ||||||||
Sbjct: 306 tttttcttcaacatgaagtattttgagga 334
>gnl|LJGI|TC66714 similar to UniRef100_A7PRX2 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 1326
Score = 89.7 bits (45), Expect = 5e-17
Identities = 195/245 (79%)
Strand = Plus / Plus
Query: 13 agcagggaattggtgtttctcatactccagtttctggatgaggagaagttcaaagagtct 72
||||||||||||||||| ||||| || || ||||| || || ||||| ||||| || ||
Sbjct: 328 agcagggaattggtgttcctcattcttcaatttctcgaggaagagaaattcaaggaagct 387
Query: 73 gttcacaaacttgagaaagaatcagggttctttttcaatatgaagtactttgaggaaaag 132
|| ||||| || ||| |||| || || ||||| |||||||||||||| ||||| || ||
Sbjct: 388 gtacacaagctggagcaagagtctggtttcttcttcaatatgaagtattttgacgagaaa 447
Query: 133 gtgcaggctggcgaatgggaagaagttgagaagtacttaacagggtttactaaagttgac 192
| | ||||| || ||||| || |||||||||||| || | ||||| | ||||| ||
Sbjct: 448 gcccttgctggagagtgggatgaggttgagaagtacctatctgggttcataaaagtcgat 507
Query: 193 gataatagatactcaatgaaaatattctttgaaatcagaaagcagaagtatctggaagca 252
|| ||| |||| || ||||||| |||||||| || || |||||||||||||| |||||
Sbjct: 508 gacaatcgatattccatgaaaactttctttgagattaggaagcagaagtatcttgaagcc 567
Query: 253 cttga 257
|||||
Sbjct: 568 cttga 572
>gnl|LJGI|TC77627 homologue to UniRef100_A7PF76 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 535
Score = 60.0 bits (30), Expect = 5e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 11 tgagcagggaattggtgtttctcatactccagtttctggatgaggagaagttcaaagagt 70
||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| || || ||||
Sbjct: 251 tgagcagagagttggtttttcttatacttcagtttctcgatgaagagaaatttaaggagt 310
Query: 71 ctgttcacaa 80
||||||||||
Sbjct: 311 ctgttcacaa 320