Miyakogusa Predicted Gene
- Lj0g3v0057179.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0057179.1 tr|G7ZYM9|G7ZYM9_MEDTR FBD-associated F-box
protein OS=Medicago truncatula GN=MTR_076s0012 PE=4
SV=1,38.3,2e-19,domain in FBox and BRCT domain containing pl,FBD;
FAMILY NOT NAMED,NULL; FBD,FBD,CUFF.2502.1
(429 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65372 similar to UniRef100_A2Q1U7 Cluster: Cyclin-lik... 850 0.0
gnl|LJGI|GO013243 337 3e-92
gnl|LJGI|TC74171 129 2e-29
gnl|LJGI|TC66247 129 2e-29
gnl|LJGI|TC76014 similar to UniRef100_A0Q6X7 Cluster: Methionine... 125 2e-28
gnl|LJGI|TC77415 111 4e-24
gnl|LJGI|BP076293 109 1e-23
gnl|LJGI|TC81149 109 1e-23
gnl|LJGI|GO005265 similar to UniRef100_A5N307 Cluster: Predicted... 107 6e-23
gnl|LJGI|FS357881 similar to UniRef100_A4VR91 Cluster: Protein i... 100 1e-20
gnl|LJGI|TC61418 weakly similar to UniRef100_Q9T0F1 Cluster: F-b... 90 1e-17
gnl|LJGI|TC77475 70 1e-11
gnl|LJGI|TC80357 66 2e-10
gnl|LJGI|BP050969 64 8e-10
>gnl|LJGI|TC65372 similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (14%)
Length = 905
Score = 850 bits (429), Expect = 0.0
Identities = 429/429 (100%)
Strand = Plus / Plus
Query: 1 atgtaccactgcaacagtttccccatgtttcacaatttaatccatcttcagcttgtctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgtaccactgcaacagtttccccatgtttcacaatttaatccatcttcagcttgtctac 363
Query: 61 caacgctataatgctcattggtctcaggtgctggaattgctccatcattgccccaagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caacgctataatgctcattggtctcaggtgctggaattgctccatcattgccccaagctt 423
Query: 121 caacttcttgccataaaccagccggatattcatagctttcactttgaacaaattcaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caacttcttgccataaaccagccggatattcatagctttcactttgaacaaattcaaaaa 483
Query: 181 ggagagtggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggagagtggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgc 543
Query: 241 tatctaaatcattatagaggcaccaaacctgagtttgaatttgcaagatatagtatgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatctaaatcattatagaggcaccaaacctgagtttgaatttgcaagatatagtatgcac 603
Query: 301 aatggaaggtttttaaagagcatgaccatatccactggtattgccaaaaatccaaagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aatggaaggtttttaaagagcatgaccatatccactggtattgccaaaaatccaaagttt 663
Query: 361 aagatgttaaaagaattatcctcatgcaagaggggctctgcaacttgtaggctttgcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagatgttaaaagaattatcctcatgcaagaggggctctgcaacttgtaggctttgcttc 723
Query: 421 aaatgacaa 429
|||||||||
Sbjct: 724 aaatgacaa 732
>gnl|LJGI|GO013243
Length = 667
Score = 337 bits (170), Expect = 3e-92
Identities = 328/380 (86%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 50 agcttgtctaccaacgctataatgctcattggtctcaggtgctggaattgctccatcatt 109
|||||||||| |||| ||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 11 agcttgtctatcaaccctataattctgattggtctcaggtagtggaattcctccatcatt 70
Query: 110 gccccaagcttcaacttcttgccataaaccagccggatattcatagctttcactttgaac 169
|||| ||||||||| |||| |||||||||||| || ||||||||||| ||| ||| |
Sbjct: 71 gccctaagcttcaagttctcctcataaaccagccaaattttcatagctttgactctgagc 130
Query: 170 aaattcaaaaa---ggagagtggcaattaccaccatctgttcctcaatgccttctattac 226
||||| |||| ||||| |||||||| ||| || | ||||| ||||| |||||||||
Sbjct: 131 aaattggaaaaataggagattggcaattcccatcaaccattcctgaatgcattctattac 190
Query: 227 accttaaaagatgctatctaaatcattatagaggcaccaaacctgagtttgaatttgcaa 286
|||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct: 191 accttagaagatgctatctaaatgattatagaggcaccaaaccggagtttcaatttgcaa 250
Query: 287 gatatagtatgcacaatggaaggtttttaaagagcatgaccatatccactggtattgcca 346
||||| |||||| || | ||| ||||||||||||||| ||||||||||||| |||||||
Sbjct: 251 aatatattatgcagaaagcaagatttttaaagagcatggccatatccactggcattgcca 310
Query: 347 aaaatccaaagtttaagatgttaaaagaattatcctcatgcaagaggggctctgcaactt 406
|||||| ||||| ||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct: 311 aaaatctaaagtctaagatgttgaaagaattatcctcatgcaagaggcactccgcaactt 370
Query: 407 gtaggctttgcttcaaatga 426
|||| |||| ||| ||||||
Sbjct: 371 gtagactttcctttaaatga 390
>gnl|LJGI|TC74171
Length = 595
Score = 129 bits (65), Expect = 2e-29
Identities = 116/133 (87%)
Strand = Plus / Plus
Query: 187 tggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgctatcta 246
||||||| ||| ||||||||||| ||||| ||||||| ||||||||| ||||||||||
Sbjct: 231 tggcaatacccatcatctgttcctaaatgcattctatttcaccttaaagaatgctatcta 290
Query: 247 aatcattatagaggcaccaaacctgagtttgaatttgcaagatatagtatgcacaatgga 306
||| ||||||||||||||||| ||||||| | ||||||||||||| ||||| ||||||
Sbjct: 291 aataattatagaggcaccaaaggtgagtttaagtttgcaagatatattatgcggaatgga 350
Query: 307 aggtttttaaaga 319
|| ||||||||||
Sbjct: 351 agatttttaaaga 363
>gnl|LJGI|TC66247
Length = 631
Score = 129 bits (65), Expect = 2e-29
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 207 tcctcaatgccttctattacaccttaaaagatgctatctaaatcattatagaggcaccaa 266
|||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct: 367 tcctgaatgcattctattacaccttaaaagttgctatctaaatgattatagaggcaccga 426
Query: 267 acctgagtttgaatttgcaagatatagtatgcacaatggaaggtttttaaagagcatgac 326
| |||| || ||||||||||||||| | | || |||||||||||||||||||| |||||
Sbjct: 427 aggtgagcttcaatttgcaagatatattctccagaatggaaggtttttaaagaggatgac 486
Query: 327 catat 331
||||
Sbjct: 487 aatat 491
>gnl|LJGI|TC76014 similar to UniRef100_A0Q6X7 Cluster: Methionine uptake transporter
(MUT) family protein; n=2; Francisella tularensis subsp.
novicida|Rep: Methionine uptake transporter (MUT) family
protein - Francisella tularensis subsp. novicida (strain
U112), partial (5%)
Length = 691
Score = 125 bits (63), Expect = 2e-28
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 182 gagagtggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgct 241
|||| ||||||| |||| |||||||||| ||| | ||||||||| |||||||||||||
Sbjct: 236 gagattggcaatgcccacaatctgttcctgaatacattctattacggcttaaaagatgct 295
Query: 242 atctaaatcattatagaggcaccaaacctgagtttgaatttgcaagatatagtatgcaca 301
|||||||| | ||||||||||||| | |||||||| ||||||||||||||| |||||| |
Sbjct: 296 atctaaatgagtatagaggcaccagagctgagtttcaatttgcaagatatattatgcaga 355
Query: 302 atggaaggtttttaaagagcatg 324
|||||| |||||| ||| ||||
Sbjct: 356 atggaatatttttagagaacatg 378
>gnl|LJGI|TC77415
Length = 889
Score = 111 bits (56), Expect = 4e-24
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 18 tttccccatgtttcacaatttaatccatcttcagcttgtctaccaacgctataatgctca 77
|||||| |||||||||||||||| ||||||| |||||| || | | ||||||| | |
Sbjct: 159 tttccctatgtttcacaatttaacccatcttgagcttgaatatagatgttataatgataa 218
Query: 78 ttggtctcaggtgctggaattgctccatcattgccccaagcttcaacttcttgccataaa 137
||||||||||||| ||||||||||||| |||||||||||||||||| |||||| || ||
Sbjct: 219 ttggtctcaggtggtggaattgctccagcattgccccaagcttcaagttcttgtcactaa 278
Query: 138 ccagccggatattcat 153
||||||| || |||||
Sbjct: 279 ccagccgtattttcat 294
Score = 75.8 bits (38), Expect = 2e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 223 ttacaccttaaaagatgctatctaaatcattatagaggcaccaaacctgagtttgaattt 282
||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||
Sbjct: 370 ttacaccttaaaagatgctatctaaatgattatagaggcactagcggtgagtttcaattt 429
Query: 283 gcaagatata 292
|||| |||||
Sbjct: 430 gcaacatata 439
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 360 taagatgttaaaagaattatcctcatgcaagaggggctctgcaacttgtaggcttt 415
|||| |||| ||||||||||||||||||| |||| |||| ||||||||| |||||
Sbjct: 513 taagttgtttaaagaattatcctcatgcacgaggtgctcaacaacttgtaagcttt 568
>gnl|LJGI|BP076293
Length = 485
Score = 109 bits (55), Expect = 1e-23
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 207 tcctcaatgccttctattacaccttaaaagatgctatctaaatcattatagaggcaccaa 266
|||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 443 tcctgaatgcattcaattacaccttaaaagatgctatctaaatgattatagaggcactga 384
Query: 267 acctgagtttgaatttgcaagatatagtatgcacaatggaaggtttttaaagagcatga 325
| ||||||| ||||||||||||||| | | || |||||||| ||||| |||||||||
Sbjct: 383 aggtgagtttcaatttgcaagatatattctccagaatggaagagttttagagagcatga 325
>gnl|LJGI|TC81149
Length = 438
Score = 109 bits (55), Expect = 1e-23
Identities = 91/103 (88%)
Strand = Plus / Plus
Query: 196 ccaccatctgttcctcaatgccttctattacaccttaaaagatgctatctaaatcattat 255
||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||
Sbjct: 71 ccaccatctgttcctaaatgcattctactacaccttaaagtttgctatctaaatgattat 130
Query: 256 agaggcaccaaacctgagtttgaatttgcaagatatagtatgc 298
|||||||||||| |||| || ||||||||||||||| |||||
Sbjct: 131 agaggcaccaaaggtgagcttcaatttgcaagatatattatgc 173
>gnl|LJGI|GO005265 similar to UniRef100_A5N307 Cluster: Predicted transporter protein;
n=1; Clostridium kluyveri DSM 555|Rep: Predicted
transporter protein - Clostridium kluyveri DSM 555,
partial (5%)
Length = 721
Score = 107 bits (54), Expect = 6e-23
Identities = 185/229 (80%), Gaps = 6/229 (2%)
Strand = Plus / Plus
Query: 187 tggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgctatcta 246
||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| | ||||
Sbjct: 275 tggcaatacccaccatgtgttcctgaatgcattctactacaccttaaaagatgttgtcta 334
Query: 247 aatcattatagaggcaccaaacctgagtttgaatttgcaagatatagtatgcacaatgga 306
||| || || |||||||||| |||||||| |||||||| |||| ||||| || | |
Sbjct: 335 aatggttttataggcaccaaaggcgagtttgagtttgcaaggtatataatgcagaaggca 394
Query: 307 aggtttttaaagagcatgaccatatccactggtattgccaaaaatc------caaagttt 360
|| |||||| |||| ||||| ||||||||||| || | |||||||| |||| ||
Sbjct: 395 agatttttacagaggatgacaatatccactggcatggacaaaaatcaatggggaaagctt 454
Query: 361 aagatgttaaaagaattatcctcatgcaagaggggctctgcaacttgta 409
|| |||||||| |||| | || ||||| ||||||||||||||||||||
Sbjct: 455 gagctgttaaaaaaattctacttatgcacgaggggctctgcaacttgta 503
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 92 tggaattgctccatcattgccccaagcttcaacttcttgccataaaccagccggatattc 151
||||||||||| | ||||||||||||||||| |||||| ||| ||||||| ||| |||
Sbjct: 174 tggaattgctcaagtattgccccaagcttcaagttcttgtcattgaccagccagatgttc 233
Query: 152 at 153
||
Sbjct: 234 at 235
>gnl|LJGI|FS357881 similar to UniRef100_A4VR91 Cluster: Protein involved in catabolism
of external DNA; n=1; Pseudomonas stutzeri A1501|Rep:
Protein involved in catabolism of external DNA -
Pseudomonas stutzeri (strain A1501), partial (8%)
Length = 723
Score = 99.6 bits (50), Expect = 1e-20
Identities = 107/126 (84%)
Strand = Plus / Minus
Query: 18 tttccccatgtttcacaatttaatccatcttcagcttgtctaccaacgctataatgctca 77
||||||||||||||||||||||| ||||||| |||||| || | | || |||| | |
Sbjct: 574 tttccccatgtttcacaatttaacccatcttgagcttgaatatagatgttacaatgataa 515
Query: 78 ttggtctcaggtgctggaattgctccatcattgccccaagcttcaacttcttgccataaa 137
||||||||||||| ||||||||||||| |||||||||| ||||||| |||| | ||| ||
Sbjct: 514 ttggtctcaggtggtggaattgctccagcattgccccatgcttcaagttctcgtcattaa 455
Query: 138 ccagcc 143
||||||
Sbjct: 454 ccagcc 449
>gnl|LJGI|TC61418 weakly similar to UniRef100_Q9T0F1 Cluster: F-box protein
At4g09920; n=1; Arabidopsis thaliana|Rep: F-box protein
At4g09920 - Arabidopsis thaliana (Mouse-ear cress),
partial (5%)
Length = 740
Score = 89.7 bits (45), Expect = 1e-17
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 212 aatgccttctattacaccttaaaagatgctatctaaatcattatagaggcaccaaacctg 271
||||| ||||| |||||||||| ||||||| ||||| ||||| ||||||| ||| ||
Sbjct: 453 aatgcattctacgacaccttaaagaatgctatttaaatgattatcgaggcacaaaaggtg 512
Query: 272 agtttgaatttgcaagatatagtatgcacaatggaaggtttttaaagag 320
||||| ||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 513 agtttcaatttgcaagatatattatgcggaatggaagggttttaaagag 561
>gnl|LJGI|TC77475
Length = 509
Score = 69.9 bits (35), Expect = 1e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 218 ttctattacaccttaaaagatgctatctaaatcattatagaggcaccaaacctgagtttg 277
|||||||||||||| || ||||||||||||| ||||||||| |||| || |||||||
Sbjct: 10 ttctattacaccttgaagaatgctatctaaatgattatagagncacccaaggtgagtttc 69
Query: 278 aatttgcaag 287
||||||||||
Sbjct: 70 aatttgcaag 79
>gnl|LJGI|TC80357
Length = 742
Score = 65.9 bits (33), Expect = 2e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 187 tggcaattaccaccatctgttcctcaatgccttctattacaccttaaaagatgctatcta 246
||||||| ||| ||||||||||| ||||| ||||| | ||||| ||| ||||| ||||
Sbjct: 349 tggcaatacccatcatctgttcctgaatgcattctactgcacctcaaagaatgctgtcta 408
Query: 247 aatcattatagaggcac 263
|||||||||||||||||
Sbjct: 409 aatcattatagaggcac 425
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 367 ttaaaagaattatcctcatgcaagaggggctctgcaacttgta 409
|||||| |||||| |||||||| |||| |||||||||||||||
Sbjct: 535 ttaaaaaaattattctcatgcacgaggtgctctgcaacttgta 577
>gnl|LJGI|BP050969
Length = 557
Score = 63.9 bits (32), Expect = 8e-10
Identities = 80/95 (84%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 204 tgttcctcaatgccttctattacaccttaaaagatgctatctaaatcattatagaggcac 263
||||||| ||||| ||||| |||||||||| ||||||| ||||| ||||| |||||||
Sbjct: 124 tgttcctaaatgcattctacgacaccttaaagaatgctatttaaatgattatcgaggcac 65
Query: 264 caaacctgagtttgaatttgcaagatatagtatgc 298
||| ||||||| |||||||||||||| |||||
Sbjct: 64 -aaaggtgagtttcnatttgcaagatatattatgc 31