Miyakogusa Predicted Gene

Lj0g3v0056929.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0056929.1 tr|G7JB15|G7JB15_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_3g107100 PE=4
SV=1,63.64,0.000000000004,FAMILY NOT NAMED,NULL; FBD,FBD; domain in
FBox and BRCT domain containing pl,FBD; seg,NULL,5713_g.1
         (276 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP051310                                                      98   3e-20
gnl|LJGI|TC79903                                                       76   1e-13

>gnl|LJGI|BP051310 
          Length = 467

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 15  aaattgggcggatccagattttgttcctgaatgccttttgttaaacctgaaaacctgctc 74
           |||||||| ||| ||||| |||||||| |||||||||   ||||| || ||| | ||  |
Sbjct: 388 aaattgggtggacccagactttgttcccgaatgccttgcattaaatcttaaatcttgtac 329

                                                                       
Query: 75  ttttcgatattttgaagacctagaagttgagcttcagttagcaagatatattttgaagaa 134
           ||| ||| ||||| ||| | || |||||||| ||||||||||||| ||| ||||||||||
Sbjct: 328 tttccgagattttaaaggcttaaaagttgagtttcagttagcaagttatgttttgaagaa 269

                                        
Query: 135 tgctagagttttacaaaccatgaaaatct 163
           ||| ||||||||| ||||||||| |||||
Sbjct: 268 tgcaagagttttagaaaccatgacaatct 240


>gnl|LJGI|TC79903 
          Length = 537

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                     
Query: 107 ttcagttagcaagatatattttgaagaatgctagagttttacaaaccatgaaaatctt 164
           ||||||||||||||||| ||||||||||||| ||||||||||||| | ||| ||||||
Sbjct: 17  ttcagttagcaagatatgttttgaagaatgcaagagttttacaaagcttgacaatctt 74