Miyakogusa Predicted Gene
- Lj0g3v0056329.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0056329.1 Non Chatacterized Hit- tr|D7MG48|D7MG48_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,33.49,9e-19,ssb: single-stranded DNA-binding
protein,Single-strand DNA-binding; SSB,Primosome
PriB/single-strand,NODE_41833_length_825_cov_115.176971.path2.1
(699 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72467 similar to UniRef100_A7PUL0 Cluster: Chromosome... 1378 0.0
gnl|LJGI|DC595602 similar to UniRef100_A7PUL0 Cluster: Chromosom... 424 e-118
gnl|LJGI|BP048760 similar to UniRef100_A7NTP7 Cluster: Chromosom... 64 1e-09
>gnl|LJGI|TC72467 similar to UniRef100_A7PUL0 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 1230
Score = 1378 bits (695), Expect = 0.0
Identities = 698/699 (99%)
Strand = Plus / Plus
Query: 1 atgtccaccaatgcatcctaccctaaaccctcggaaatcccgtggcagaaggagctctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtccaccaatgcatcctaccctaaaccctcggaaatcccgtggcagaaggagctctgc 260
Query: 61 aactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagcacttcccctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagcacttcccctcc 320
Query: 121 ggcaaggtcgcttcctggacccgcctcgccgtcaagaaaaacgccacccagacttcgtgg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaaggtcgcttcctggacccacctcgccgtcaagaaaaacgccacccagacttcgtgg 380
Query: 181 gttaatctcacgttctgggatgaacttgctcatgttgcttttcagcatgtccagaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaatctcacgttctgggatgaacttgctcatgttgcttttcagcatgtccagaaaggt 440
Query: 241 caccagattcatgtctctggtcgcctcgtcgctgacaccgtcgaaaccgatgaagggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccagattcatgtctctggtcgcctcgtcgctgacaccgtcgaaaccgatgaagggaaa 500
Query: 301 cagcaaacctactataaggtggttgctcaggagctgaatttcattgataggagcttctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcaaacctactataaggtggttgctcaggagctgaatttcattgataggagcttctca 560
Query: 361 caagtgaattctcaggatcaggactctgatttcatgatgtctggcaatggtagaaaagcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagtgaattctcaggatcaggactctgatttcatgatgtctggcaatggtagaaaagcg 620
Query: 421 gggtatgctgcaaatagtactgggtctgtgatggaattgtggcaagctttctttgctaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtatgctgcaaatagtactgggtctgtgatggaattgtggcaagctttctttgctaac 680
Query: 481 ccaggggagtggtgggacaatagaaacaaaaagaggaacccgaaagcgcctgattttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaggggagtggtgggacaatagaaacaaaaagaggaacccgaaagcgcctgattttaag 740
Query: 541 cacaaagatactggagaagctctgtggatcgaaggtagatccactccatcatgggtcaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaaagatactggagaagctctgtggatcgaaggtagatccactccatcatgggtcaat 800
Query: 601 tcccaactggagataatggactcaaggatggggtcgtttacaggtcaaaggatgcctgta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcccaactggagataatggactcaaggatggggtcgtttacaggtcaaaggatgcctgta 860
Query: 661 gatatggtgacaacagatgaaatcttctctcgctaaaag 699
|||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gatatggtgacaacagatgaaatcttctctcgctaaaag 899
>gnl|LJGI|DC595602 similar to UniRef100_A7PUL0 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (35%)
Length = 373
Score = 424 bits (214), Expect = e-118
Identities = 220/222 (99%)
Strand = Plus / Plus
Query: 1 atgtccaccaatgcatcctaccctaaaccctcggaaatcccgtggcagaaggagctctgc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 152 atgtccaccaatgcatcctaccctaaaccctccgaaatcccgtggcagaaggagctctgc 211
Query: 61 aactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagcacttcccctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aactccgtcagcctcatcggcaccgtcggcgcccccgtcgaaatcaagcacttcccctcc 271
Query: 121 ggcaaggtcgcttcctggacccgcctcgccgtcaagaaaaacgccacccagacttcgtgg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggcaaggtcgcttcctggacccacctcgccgtcaagaaaaacgccacccagacttcgtgg 331
Query: 181 gttaatctcacgttctgggatgaacttgctcatgttgctttt 222
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttaatctcacgttctgggatgaacttgctcatgttgctttt 373
>gnl|LJGI|BP048760 similar to UniRef100_A7NTP7 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (21%)
Length = 555
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 528 gcctgattttaagcacaaagatactggagaagctctgtgg 567
|||||||||||||||||| |||||||| ||||||||||||
Sbjct: 467 gcctgattttaagcacaaggatactggtgaagctctgtgg 428