Miyakogusa Predicted Gene
- Lj0g3v0049129.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0049129.1 tr|G7L8X6|G7L8X6_MEDTR Ras-related protein Rab-5C
OS=Medicago truncatula GN=MTR_8g103550 PE=3 SV=1,92.47,0,RAB,NULL; no
description,NULL; small_GTP: small GTP-binding protein domain,Small
GTP-binding protein,CUFF.2304.1
(600 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80246 similar to UniRef100_A7PER1 Cluster: Chromosome... 1104 0.0
gnl|LJGI|TC76825 similar to UniRef100_A7PER1 Cluster: Chromosome... 98 8e-20
gnl|LJGI|TC57678 homologue to UniRef100_Q41668 Cluster: Guanine ... 64 1e-09
>gnl|LJGI|TC80246 similar to UniRef100_A7PER1 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (92%)
Length = 1028
Score = 1104 bits (557), Expect = 0.0
Identities = 591/601 (98%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 1 atggcgaggaccggaaacaagagtttacaagccaaactggtgcttcttggagacatggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atggcgaggaccggaaacaagagtttacaagccaaactggtgcttcttggagacatggga 126
Query: 61 acagggaagacaagcttggttcttagatttgtcaaaggccaattttctgagtaccaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 acagggaagacaagcttggttcttagatttgtcaaaggccaattttctgagtaccaggaa 186
Query: 121 tcaacaattggagcagcattcttcactcaggttttgtctttgaatgaagccacggtgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcaacaattggagcagcattcttcactcaggttttgtctttgaatgaagccacggtgaag 246
Query: 181 tttgatatatgggacactgcagggcaagaacgataccactgtttggctcctatgtactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttgatatatgggacactgcagggcaagaacgataccactgtttggctcctatgtactat 306
Query: 241 cgtggtgctgcttctgctatagttgtctatgacattacaagcatggaatcttttgtgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cgtggtgctgcttctgctatagttgtctatgacattacaagcatggaatcttttgtgaga 366
Query: 301 gcaaagaagtgggttcgagaagtgcaaagacaagcaaatccaaatttgatcatgtttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gcaaagaagtgggttcgagaagtgcaaagacaagcaaatccaaatttgatcatgtttttg 426
Query: 361 gtggctaacaaggctgatttggaagatgagagaaaagtcagaaatgaggatggtgaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtggctaacaaggctgatttggaagatgagagaaaagtcagaaatgaggatggtgaggaa 486
Query: 421 tatgccaaagaaaatggtatgaccttttttgaaacttcagcaaaaaccgcacagaatgtc 480
|||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 487 tatgcccaagaaaatggtatgaccttttttgaaacttcagcaaaaaccgccccgaatgtc 546
Query: 481 aatgagctcttctatgaaatagctaagagattggcaaaagctaatccttcacgtcaaacc 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 547 aatgagctcttctatgaaatagctaagagattggccaaagctaatccttcacgtccaacc 606
Query: 541 ggaatcaagctg-caaagcagacctcaagaaagaagaagaatgttttgttgtgcttaata 599
|||||| ||||| | ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 607 ggaatccagctgcccaagcagacctccagcaagaagaagaatgttttgttgtgcttaata 666
Query: 600 g 600
|
Sbjct: 667 g 667
>gnl|LJGI|TC76825 similar to UniRef100_A7PER1 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (90%)
Length = 728
Score = 97.6 bits (49), Expect = 8e-20
Identities = 205/257 (79%)
Strand = Plus / Plus
Query: 28 caagccaaactggtgcttcttggagacatgggaacagggaagacaagcttggttcttaga 87
|||||||| ||||| |||||||||||||||||||| |||||||| || || | | |||
Sbjct: 20 caagccaagctggtacttcttggagacatgggaactgggaagaccagtttagcattaaga 79
Query: 88 tttgtcaaaggccaattttctgagtaccaggaatcaacaattggagcagcattcttcact 147
||||| ||||| ||||| | | |||||||| |||| | ||||| || || ||||||
Sbjct: 80 tttgttaaaggacaattctatccaaaccaggaaccaactgtgggagctgcttttttcact 139
Query: 148 caggttttgtctttgaatgaagccacggtgaagtttgatatatgggacactgcagggcaa 207
|| | || || || |||||| || ||||||||||| ||||||||||| ||||| ||
Sbjct: 140 caaatattatcattatctgaagcaactgtgaagtttgacatatgggacacagcaggacag 199
Query: 208 gaacgataccactgtttggctcctatgtactatcgtggtgctgcttctgctatagttgtc 267
|||||||| || || |||||||||||||||| |||||||| || |||| || |||||
Sbjct: 200 gaacgatatcatagtctggctcctatgtactaccgtggtgcagcagctgcaattgttgtg 259
Query: 268 tatgacattacaagcat 284
|||||||| |||||||
Sbjct: 260 tatgacatctcaagcat 276
Score = 52.0 bits (26), Expect = 4e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 479 tcaatgagctcttctatgaaatagctaagagatt 512
|||||||||| |||||||||||||| ||||||||
Sbjct: 471 tcaatgagcttttctatgaaatagccaagagatt 504
>gnl|LJGI|TC57678 homologue to UniRef100_Q41668 Cluster: Guanine nucleotide
regulatory protein; n=1; Vicia faba|Rep: Guanine
nucleotide regulatory protein - Vicia faba (Broad bean),
complete
Length = 1059
Score = 63.9 bits (32), Expect = 1e-09
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 163 aatgaagccacggtgaagtttgatatatgggacactgcagggcaagaacgataccactgt 222
||||| ||||| ||||| ||||| || |||||||| ||||| ||||| ||||||| |
Sbjct: 310 aatgatgccacagtgaaatttgagatttgggacacagcaggacaagagagataccatagc 369
Query: 223 ttggctcctatgtactatcgtggtgctgcttctgctatagttgtctatgacattac 278
|||||||| ||||| || | || |||||| ||||||| ||||||||||||||||
Sbjct: 370 ttggctcccatgtattacagaggcgctgctgctgctatcattgtctatgacattac 425