Miyakogusa Predicted Gene

Lj0g3v0048599.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0048599.1 tr|F4XRB8|F4XRB8_9CYAN 50S ribosomal protein L28
OS=Moorea producens 3L GN=rpl28 PE=3 SV=1,63.01,3e-19,no
description,NULL; seg,NULL; L28: ribosomal protein L28,Ribosomal
protein L28; Ribosomal_L28,Ribos,CUFF.2259.1
         (444 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62061 homologue to UniRef100_O22795 Cluster: 50S ribo...   880   0.0  
gnl|LJGI|AV427620 similar to UniRef100_A9VDC0 Cluster: Predicted...   168   2e-41
gnl|LJGI|AV766105 similar to UniRef100_A7NXF7 Cluster: Chromosom...   133   1e-30

>gnl|LJGI|TC62061 homologue to UniRef100_O22795 Cluster: 50S ribosomal protein L28,
           chloroplast precursor; n=1; Arabidopsis thaliana|Rep:
           50S ribosomal protein L28, chloroplast precursor -
           Arabidopsis thaliana (Mouse-ear cress), partial (71%)
          Length = 714

 Score =  880 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaggttgtgcagtatcattggcaaacagcttcaccttcgcttcacgcgcagtcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  atggcaggttgtgcagtatcattggcaaacagcttcaccttcgcttcacgcgcagtcgca 125

                                                                       
Query: 61  gtcgcagttgcacccaccaaatcatccttttcctcaacccagctagggttcgtgacctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcgcagttgcacccaccaaatcatccttttcctcaacccagctagggttcgtgacctcg 185

                                                                       
Query: 121 cagttgagcggcctcagtctctgctgccagccccagcctacactaaaattgccctcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cagttgagcggcctcagtctctgctgccagccccagcctacactaaaattgccctcaccc 245

                                                                       
Query: 181 gttgttgttgttgcttctccaattgttgctcggaggatttgtcccttcaccggaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gttgttgttgttgcttctccaattgttgctcggaggatttgtcccttcaccggaaagaaa 305

                                                                       
Query: 241 gcaaacagggccaacaaagtgtctttttcaaatcacaagacaaagaaactgcagtttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaaacagggccaacaaagtgtctttttcaaatcacaagacaaagaaactgcagtttgta 365

                                                                       
Query: 301 aaccttcaatacaagagaatttggtgggaagctgggaagcgatatgtgaagcttcgttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaccttcaatacaagagaatttggtgggaagctgggaagcgatatgtgaagcttcgttta 425

                                                                       
Query: 361 tcaaccaaggcattgaagaccatagagaagaatggacttgatgcagttgcgaagaaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcaaccaaggcattgaagaccatagagaagaatggacttgatgcagttgcgaagaaggct 485

                                   
Query: 421 ggagttgatcttaggaagaaataa 444
           ||||||||||||||||||||||||
Sbjct: 486 ggagttgatcttaggaagaaataa 509


>gnl|LJGI|AV427620 similar to UniRef100_A9VDC0 Cluster: Predicted protein; n=1;
           Monosiga brevicollis MX1|Rep: Predicted protein -
           Monosiga brevicollis MX1, partial (23%)
          Length = 166

 Score =  168 bits (85), Expect = 2e-41
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaggttgtgcagtatcattggcaaacagcttcaccttcgcttcacgcgcagtcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  atggcaggttgtgcagtatcattggcaaacagcttcaccttcgcttcacgcgcagtcgca 140

                                    
Query: 61  gtcgcagttgcacccaccaaatcat 85
           |||||||||||||||||||||||||
Sbjct: 141 gtcgcagttgcacccaccaaatcat 165


>gnl|LJGI|AV766105 similar to UniRef100_A7NXF7 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (28%)
          Length = 314

 Score =  133 bits (67), Expect = 1e-30
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                       
Query: 318 aatttggtgggaagctgggaagcgatatgtgaagcttcgtttatcaaccaaggcattgaa 377
           ||||||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||
Sbjct: 310 aatttggtgggaagctgggaagcaaaatgtgaagcttcgtttttcacccaaggcattgaa 251

                                                                       
Query: 378 gaccatagagaagaatggacttgatgcagttgcgaagaaggctggagttgatcttaggaa 437
           | ||||| | || ||| ||||| || ||||||| || ||||||||||||||| |||||||
Sbjct: 250 gcccataaaaaaaaattgacttaatccagttgcaaaaaaggctggagttgattttaggaa 191

                  
Query: 438 gaaataa 444
            ||||||
Sbjct: 190 aaaataa 184