Miyakogusa Predicted Gene
- Lj0g3v0047679.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0047679.1 tr|G7KGS7|G7KGS7_MEDTR Pumilio-like protein
OS=Medicago truncatula GN=MTR_5g080390 PE=4 SV=1,70.6,0,Pumilio-like
repeats,Pumilio RNA-binding repeat; NABP,Nucleic acid binding NABP;
PUF,Pumilio RNA-bin,NODE_20525_length_3457_cov_90.338730.path1.1
(3096 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosom... 860 0.0
gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic ... 398 e-110
gnl|LJGI|TC66980 homologue to UniRef100_UPI0000163374 Cluster: A... 60 9e-08
>gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 434
Score = 860 bits (434), Expect = 0.0
Identities = 434/434 (100%)
Strand = Plus / Plus
Query: 1811 ctggcagaaatccatcatatggtctcggtatgacatatccaggaagtccactggctggtt 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggcagaaatccatcatatggtctcggtatgacatatccaggaagtccactggctggtt 60
Query: 1871 ctgtttacccaaactccttctatggacccagtagtcctatgagccaaagtgaacggaata 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtttacccaaactccttctatggacccagtagtcctatgagccaaagtgaacggaata 120
Query: 1931 tgcggttgtctggaatgaggaatgtggctggcagtgtcatgggagcttggcaagcgaaca 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcggttgtctggaatgaggaatgtggctggcagtgtcatgggagcttggcaagcgaaca 180
Query: 1991 ctgttggaagtttggatgagaattttccatcttccttgctcgatgagttcaaaagcaaca 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgttggaagtttggatgagaattttccatcttccttgctcgatgagttcaaaagcaaca 240
Query: 2051 aaaccaaatgctttgaacttgcagaaattgctggccatgttgttgacttcagttctgacc 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccaaatgctttgaacttgcagaaattgctggccatgttgttgacttcagttctgacc 300
Query: 2111 agtatggaagccgttttatccaacagaaacttgagacagccacaatggacgagaaaaata 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtatggaagccgttttatccaacagaaacttgagacagccacaatggacgagaaaaata 360
Query: 2171 tggttttccatgaaatcatgccacaggctctttctctgatgactgatgtctttggtaatt 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggttttccatgaaatcatgccacaggctctttctctgatgactgatgtctttggtaatt 420
Query: 2231 atgtgattcagaag 2244
||||||||||||||
Sbjct: 421 atgtgattcagaag 434
>gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
n=1; Medicago truncatula|Rep: Nucleic acid binding NABP -
Medicago truncatula (Barrel medic), partial (32%)
Length = 1412
Score = 398 bits (201), Expect = e-110
Identities = 780/973 (80%)
Strand = Plus / Plus
Query: 2081 ctggccatgttgttgacttcagttctgaccagtatggaagccgttttatccaacagaaac 2140
|||||||||||||||| |||||| |||| || ||||| ||||| ||||||||||| || |
Sbjct: 2 ctggccatgttgttgaattcagtgctgatcaatatgggagccggtttatccaacaaaagc 61
Query: 2141 ttgagacagccacaatggacgagaaaaatatggttttccatgaaatcatgccacaggctc 2200
| || ||||| || | || || || | ||||||| || ||||| ||||| || ||||
Sbjct: 62 tggaaacagcaactactgaagaaaagaccatggtttatcaggaaattatgcctcatgctc 121
Query: 2201 tttctctgatgactgatgtctttggtaattatgtgattcagaagttttttgagcatggaa 2260
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 122 ttgcattgatgactgatgtctttggtaattatgtggttcagaagttttttgagcatggac 181
Query: 2261 cgccggcgcagataagagaactggctgaccaacttaccagtcatgtgctgaccctaagtc 2320
| | |||| |||||| | || || | ||| || ||||| ||| | || || |
Sbjct: 182 ttgcatcccagagaagagagttagccaacaagctttttagccatgttctggcacttagcc 241
Query: 2321 ttcaaatgtatggctgccgagttatccagaaggcaatagaagttgttggtttagatcagc 2380
||||||||||||| || || || ||||||||||| ||||||||||||| | |||| |||
Sbjct: 242 ttcaaatgtatggttgtcgggtcatccagaaggccatagaagttgttgatctagaccaga 301
Query: 2381 agactcaaatggttgcagaactggatggtcatatcatgcgttgtgttcgtgatcaaaatg 2440
||| | |||||| || || |||||| |||||||||| ||||| || ||||| ||||
Sbjct: 302 agataaatatggttcaggagcttgatggtaatatcatgcgctgtgtacgagatcagaatg 361
Query: 2441 ggaaccatgtcatccagaagtgtattgaatgtgtacctgaggattcaatccaattcattg 2500
| |||||||| || |||||||||||||||||||||||||| ||| ||||| | || ||||
Sbjct: 362 gtaaccatgttattcagaagtgtattgaatgtgtacctgaagatgcaatcgactttattg 421
Query: 2501 tgtcgactttttatgaccaagttgtgacactgtcaactcatccatatggttgccgagtta 2560
| || || |||| ||| |||||||||||||| ||||| ||||||||||| || || || |
Sbjct: 422 tctcaaccttttttgatcaagttgtgacactatcaacccatccatatggatgtcgggtga 481
Query: 2561 tacagagagtcttggagtactgccatgatcccaaaacgcagcagattatgatggatgaga 2620
||||||||||| ||||| ||||| | ||||| || || ||||| | | ||||||||||
Sbjct: 482 tacagagagtcctggagcactgcaaagatcctaacacacagcaaaaagttatggatgaga 541
Query: 2621 ttttgcagtctgtctgcatgttagcacaagaccaatatgggaattatgttgtacagcatg 2680
|||| | | || |||||||||| || || || || || || |||||||| |||||||
Sbjct: 542 ttttaggggcagttagcatgttagcccaggatcagtacggaaactatgttgtccagcatg 601
Query: 2681 tgctggagcatggcaagccacatgagcgttcggctataataaaagaattaactgggcaaa 2740
| || |||||||| || || ||||||||||| ||||| || || |||||| |||| | |
Sbjct: 602 tacttgagcatgggaaacctcatgagcgttcagctattatcaaggaattagctggcaata 661
Query: 2741 tagtgcagatgagccagcagaagtttgcctccaatgtcatagagaagtgtctatcatttg 2800
| || || |||||||| |||||||||||||| ||||| | ||||||||| | | ||||
Sbjct: 662 ttgttcaaatgagccaacagaagtttgcctcaaatgttgtggagaagtgtttggcctttg 721
Query: 2801 gaacacctgcagagcgtcaattccttgtaaatgagatgcttggttctactgatgaaaatg 2860
|| ||||| || || ||||||||||| ||||||||||| || || || ||||||||||
Sbjct: 722 gaggtcctgctgaacgccaattccttgtgaatgagatgctcggatccacggatgaaaatg 781
Query: 2861 agcccctacaggctatgatgaaggatcagtttgcaaattatgttgtacagaaagtgttgg 2920
|||| || ||||| |||||||| ||||| ||||| ||||||||||| || || ||| |||
Sbjct: 782 agcctcttcaggccatgatgaaagatcaatttgctaattatgttgtgcaaaaggtgctgg 841
Query: 2921 aaacctgtgatgaccagcagctggagctaatccttaatcgaattaaggttcacctgaatg 2980
| || ||||||||||| |||| |||||||| ||| |||||||| || || ||||||
Sbjct: 842 agacttgtgatgaccatcagcgtgagctaattctttcacgaattaaagtccatttgaatg 901
Query: 2981 ccttgaagaagtatacttatgggaagcacattgttgctcgtgtagagaaattggttgctg 3040
| ||||| || || || || || ||||| ||||| || |||||||||||| | |||||||
Sbjct: 902 cattgaaaaaatacacctacggaaagcatattgtcgcacgtgtagagaaacttgttgctg 961
Query: 3041 ctggagagaggag 3053
|||||||||||||
Sbjct: 962 ctggagagaggag 974
>gnl|LJGI|TC66980 homologue to UniRef100_UPI0000163374 Cluster: APUM4 (ARABIDOPSIS
PUMILIO 4); RNA binding; n=1; Arabidopsis thaliana|Rep:
APUM4 (ARABIDOPSIS PUMILIO 4); RNA binding - Arabidopsis
thaliana, partial (7%)
Length = 700
Score = 60.0 bits (30), Expect = 9e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 2857 aatgagcccctacaggctatgatgaaggatcagtttgcaaattatgttgt 2906
||||||||| ||||||||||||||||||| | |||| ||||||||||||
Sbjct: 5 aatgagcccttacaggctatgatgaaggacccttttggaaattatgttgt 54